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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=28)
GPGPGPGPQGIAGQRGVVGLGPGPGPGP

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 2mqs-a1-m1-cC 28 28 1.0000 1.0000 1.0000 1.66e-09 2mqs-a1-m1-cD_2mqs-a1-m1-cC
2 2mqs-a1-m1-cB 28 28 1.0000 1.0000 1.0000 1.66e-09 2mqs-a1-m1-cD_2mqs-a1-m1-cB
3 3hr2-a1-m9-cC 939 16 0.5714 0.0170 1.0000 0.006 3hr2-a1-m9-cA_3hr2-a1-m9-cC
4 3hr2-a1-m9-cA 939 16 0.5714 0.0170 1.0000 0.006 3hr2-a1-m9-cA_3hr2-a1-m9-cC
5 3hqv-a1-m9-cA 939 16 0.5714 0.0170 1.0000 0.006 3hqv-a1-m8-cC_3hqv-a1-m9-cA
6 3hqv-a1-m8-cC 939 16 0.5714 0.0170 1.0000 0.006 3hqv-a1-m8-cC_3hqv-a1-m9-cA
7 3hqv-a1-m3-cA 939 16 0.5714 0.0170 1.0000 0.006 3hqv-a1-m1-cA_3hqv-a1-m3-cA
8 3hqv-a1-m1-cA 939 16 0.5714 0.0170 1.0000 0.006 3hqv-a1-m1-cA_3hqv-a1-m3-cA
9 4auo-a1-m1-cC 32 26 0.6786 0.5938 0.7308 0.10 4auo-a1-m1-cE_4auo-a1-m1-cC
10 6los-a1-m2-cG 21 24 0.6071 0.8095 0.7083 0.15 6los-a1-m2-cH_6los-a1-m2-cG
11 4auo-a2-m1-cH 28 22 0.5357 0.5357 0.6818 0.93 4auo-a2-m1-cH_4auo-a2-m1-cF, 4auo-a2-m1-cH_4auo-a2-m1-cG
12 4auo-a1-m1-cE 28 22 0.5357 0.5357 0.6818 0.93 4auo-a1-m1-cE_4auo-a1-m1-cC, 4auo-a1-m1-cE_4auo-a1-m1-cD
13 4auo-a2-m1-cG 30 24 0.6071 0.5667 0.7083 1.1 4auo-a2-m1-cF_4auo-a2-m1-cG, 4auo-a2-m1-cH_4auo-a2-m1-cG
14 4auo-a2-m1-cF 30 24 0.6071 0.5667 0.7083 1.1 4auo-a2-m1-cF_4auo-a2-m1-cG, 4auo-a2-m1-cH_4auo-a2-m1-cF
15 4auo-a1-m1-cD 30 24 0.6071 0.5667 0.7083 1.1 4auo-a1-m1-cE_4auo-a1-m1-cD
16 6los-a1-m2-cH 19 22 0.5357 0.7895 0.6818 1.6 6los-a1-m2-cH_6los-a1-m2-cG
17 7wws-a1-m1-cC 21 14 0.3214 0.4286 0.6429 8.7 7wws-a1-m1-cA_7wws-a1-m1-cC, 7wws-a1-m1-cB_7wws-a1-m1-cC
18 7wws-a1-m1-cB 21 14 0.3214 0.4286 0.6429 8.7 7wws-a1-m1-cA_7wws-a1-m1-cB, 7wws-a1-m1-cB_7wws-a1-m1-cC
19 7wws-a1-m1-cA 21 14 0.3214 0.4286 0.6429 8.7 7wws-a1-m1-cA_7wws-a1-m1-cB, 7wws-a1-m1-cA_7wws-a1-m1-cC

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Reference:
Jacob Schwartz et al.

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