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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=28)
GPGPGPGPQGLAGQRGIVGLGQRGERGP

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 4auo-a2-m1-cH 28 28 1.0000 1.0000 1.0000 4.74e-11 4auo-a2-m1-cH_4auo-a2-m1-cF, 4auo-a2-m1-cH_4auo-a2-m1-cG
2 4auo-a1-m1-cE 28 28 1.0000 1.0000 1.0000 4.74e-11 4auo-a1-m1-cE_4auo-a1-m1-cC, 4auo-a1-m1-cE_4auo-a1-m1-cD
3 4auo-a2-m1-cG 30 28 1.0000 0.9333 1.0000 6.82e-11 4auo-a2-m1-cF_4auo-a2-m1-cG, 4auo-a2-m1-cH_4auo-a2-m1-cG
4 4auo-a2-m1-cF 30 28 1.0000 0.9333 1.0000 6.82e-11 4auo-a2-m1-cF_4auo-a2-m1-cG, 4auo-a2-m1-cH_4auo-a2-m1-cF
5 4auo-a1-m1-cD 30 28 1.0000 0.9333 1.0000 6.82e-11 4auo-a1-m1-cE_4auo-a1-m1-cD
6 4auo-a1-m1-cC 32 28 1.0000 0.8750 1.0000 8.35e-11 4auo-a1-m1-cE_4auo-a1-m1-cC
7 3hr2-a1-m9-cC 939 22 0.6786 0.0202 0.8636 1.38e-05 3hr2-a1-m9-cA_3hr2-a1-m9-cC
8 3hr2-a1-m9-cA 939 22 0.6786 0.0202 0.8636 1.38e-05 3hr2-a1-m9-cA_3hr2-a1-m9-cC
9 3hqv-a1-m9-cA 939 22 0.6786 0.0202 0.8636 1.38e-05 3hqv-a1-m8-cC_3hqv-a1-m9-cA
10 3hqv-a1-m8-cC 939 22 0.6786 0.0202 0.8636 1.38e-05 3hqv-a1-m8-cC_3hqv-a1-m9-cA
11 3hqv-a1-m3-cA 939 22 0.6786 0.0202 0.8636 1.38e-05 3hqv-a1-m1-cA_3hqv-a1-m3-cA
12 3hqv-a1-m1-cA 939 22 0.6786 0.0202 0.8636 1.38e-05 3hqv-a1-m1-cA_3hqv-a1-m3-cA
13 4ba0-a1-m2-cA 781 23 0.3571 0.0128 0.4348 2.4 4ba0-a1-m1-cA_4ba0-a1-m2-cA
14 4ba0-a1-m1-cA 781 23 0.3571 0.0128 0.4348 2.4 4ba0-a1-m1-cA_4ba0-a1-m2-cA
15 7wws-a1-m1-cC 21 14 0.3571 0.4762 0.7143 3.0 7wws-a1-m1-cA_7wws-a1-m1-cC, 7wws-a1-m1-cB_7wws-a1-m1-cC
16 7wws-a1-m1-cB 21 14 0.3571 0.4762 0.7143 3.0 7wws-a1-m1-cA_7wws-a1-m1-cB, 7wws-a1-m1-cB_7wws-a1-m1-cC
17 7wws-a1-m1-cA 21 14 0.3571 0.4762 0.7143 3.0 7wws-a1-m1-cA_7wws-a1-m1-cB, 7wws-a1-m1-cA_7wws-a1-m1-cC

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Reference:
Jacob Schwartz et al.

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