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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=30)
GPGPGPGPQGLAGQRGIVGLGQRGERGPGP

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 4auo-a2-m1-cG 30 30 1.0000 1.0000 1.0000 5.59e-12 4auo-a2-m1-cF_4auo-a2-m1-cG, 4auo-a2-m1-cH_4auo-a2-m1-cG
2 4auo-a2-m1-cF 30 30 1.0000 1.0000 1.0000 5.59e-12 4auo-a2-m1-cF_4auo-a2-m1-cG, 4auo-a2-m1-cH_4auo-a2-m1-cF
3 4auo-a1-m1-cD 30 30 1.0000 1.0000 1.0000 5.59e-12 4auo-a1-m1-cE_4auo-a1-m1-cD
4 4auo-a1-m1-cC 32 30 1.0000 0.9375 1.0000 8.34e-12 4auo-a1-m1-cE_4auo-a1-m1-cC
5 4auo-a2-m1-cH 28 22 0.7333 0.7857 1.0000 6.25e-06 4auo-a2-m1-cH_4auo-a2-m1-cF, 4auo-a2-m1-cH_4auo-a2-m1-cG
6 4auo-a1-m1-cE 28 22 0.7333 0.7857 1.0000 6.25e-06 4auo-a1-m1-cE_4auo-a1-m1-cC, 4auo-a1-m1-cE_4auo-a1-m1-cD
7 3hr2-a1-m9-cC 939 22 0.6333 0.0202 0.8636 1.51e-05 3hr2-a1-m9-cA_3hr2-a1-m9-cC
8 3hr2-a1-m9-cC 939 24 0.5000 0.0160 0.6250 2.7 3hr2-a1-m9-cA_3hr2-a1-m9-cC
9 3hr2-a1-m9-cC 939 31 0.6333 0.0202 0.6129 7.8 3hr2-a1-m9-cA_3hr2-a1-m9-cC
10 3hr2-a1-m9-cA 939 22 0.6333 0.0202 0.8636 1.51e-05 3hr2-a1-m9-cA_3hr2-a1-m9-cC
11 3hr2-a1-m9-cA 939 24 0.5000 0.0160 0.6250 2.7 3hr2-a1-m9-cA_3hr2-a1-m9-cC
12 3hr2-a1-m9-cA 939 31 0.6333 0.0202 0.6129 7.8 3hr2-a1-m9-cA_3hr2-a1-m9-cC
13 3hqv-a1-m9-cA 939 22 0.6333 0.0202 0.8636 1.51e-05 3hqv-a1-m8-cC_3hqv-a1-m9-cA
14 3hqv-a1-m9-cA 939 24 0.5000 0.0160 0.6250 2.7 3hqv-a1-m8-cC_3hqv-a1-m9-cA
15 3hqv-a1-m9-cA 939 31 0.6333 0.0202 0.6129 7.8 3hqv-a1-m8-cC_3hqv-a1-m9-cA
16 3hqv-a1-m8-cC 939 22 0.6333 0.0202 0.8636 1.51e-05 3hqv-a1-m8-cC_3hqv-a1-m9-cA
17 3hqv-a1-m8-cC 939 24 0.5000 0.0160 0.6250 2.7 3hqv-a1-m8-cC_3hqv-a1-m9-cA
18 3hqv-a1-m8-cC 939 31 0.6333 0.0202 0.6129 7.8 3hqv-a1-m8-cC_3hqv-a1-m9-cA
19 3hqv-a1-m3-cA 939 22 0.6333 0.0202 0.8636 1.51e-05 3hqv-a1-m1-cA_3hqv-a1-m3-cA
20 3hqv-a1-m3-cA 939 24 0.5000 0.0160 0.6250 2.7 3hqv-a1-m1-cA_3hqv-a1-m3-cA
21 3hqv-a1-m3-cA 939 31 0.6333 0.0202 0.6129 7.8 3hqv-a1-m1-cA_3hqv-a1-m3-cA
22 3hqv-a1-m1-cA 939 22 0.6333 0.0202 0.8636 1.51e-05 3hqv-a1-m1-cA_3hqv-a1-m3-cA
23 3hqv-a1-m1-cA 939 24 0.5000 0.0160 0.6250 2.7 3hqv-a1-m1-cA_3hqv-a1-m3-cA
24 3hqv-a1-m1-cA 939 31 0.6333 0.0202 0.6129 7.8 3hqv-a1-m1-cA_3hqv-a1-m3-cA
25 4ba0-a1-m2-cA 781 23 0.3333 0.0128 0.4348 2.8 4ba0-a1-m1-cA_4ba0-a1-m2-cA
26 4ba0-a1-m1-cA 781 23 0.3333 0.0128 0.4348 2.8 4ba0-a1-m1-cA_4ba0-a1-m2-cA
27 7wws-a1-m1-cC 21 14 0.3333 0.4762 0.7143 4.1 7wws-a1-m1-cA_7wws-a1-m1-cC, 7wws-a1-m1-cB_7wws-a1-m1-cC
28 7wws-a1-m1-cB 21 14 0.3333 0.4762 0.7143 4.1 7wws-a1-m1-cA_7wws-a1-m1-cB, 7wws-a1-m1-cB_7wws-a1-m1-cC
29 7wws-a1-m1-cA 21 14 0.3333 0.4762 0.7143 4.1 7wws-a1-m1-cA_7wws-a1-m1-cB, 7wws-a1-m1-cA_7wws-a1-m1-cC

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Reference:
Jacob Schwartz et al.

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