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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=19)
GPGPGPGPRGQGVGFGPGP

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 2wuh-a1-m1-cD 19 19 1.0000 1.0000 1.0000 9.43e-05 2wuh-a1-m1-cD_2wuh-a1-m1-cB, 2wuh-a1-m1-cD_2wuh-a1-m1-cC
2 2wuh-a1-m1-cC 20 19 1.0000 0.9500 1.0000 1.13e-04 2wuh-a1-m1-cD_2wuh-a1-m1-cC
3 2wuh-a1-m1-cB 20 19 1.0000 0.9500 1.0000 1.13e-04 2wuh-a1-m1-cD_2wuh-a1-m1-cB
4 4dmt-a1-m1-cC 22 20 1.0000 0.8636 0.9500 0.008 4dmt-a1-m1-cA_4dmt-a1-m1-cC, 4dmt-a1-m1-cB_4dmt-a1-m1-cC
5 4dmt-a1-m1-cB 22 20 1.0000 0.8636 0.9500 0.008 4dmt-a1-m1-cA_4dmt-a1-m1-cB, 4dmt-a1-m1-cB_4dmt-a1-m1-cC
6 4dmt-a1-m1-cA 22 20 1.0000 0.8636 0.9500 0.008 4dmt-a1-m1-cA_4dmt-a1-m1-cB, 4dmt-a1-m1-cA_4dmt-a1-m1-cC
7 4gyx-a1-m1-cB 22 18 0.8947 0.7727 0.9444 0.055 4gyx-a1-m1-cA_4gyx-a1-m1-cB
8 4gyx-a1-m1-cA 22 18 0.8947 0.7727 0.9444 0.055 4gyx-a1-m1-cA_4gyx-a1-m1-cB

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Reference:
Jacob Schwartz et al.

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