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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=26)
GPGPGPGPSGPRGQGVMGFGPKGPGA

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 2v53-a1-m1-cD 26 26 1.0000 1.0000 1.0000 2.75e-09 2v53-a1-m1-cB_2v53-a1-m1-cD, 2v53-a1-m1-cC_2v53-a1-m1-cD
2 2v53-a1-m1-cC 26 26 1.0000 1.0000 1.0000 2.75e-09 2v53-a1-m1-cC_2v53-a1-m1-cD
3 2v53-a1-m1-cB 26 26 1.0000 1.0000 1.0000 2.75e-09 2v53-a1-m1-cB_2v53-a1-m1-cD
4 3hr2-a1-m9-cB 944 19 0.5385 0.0148 0.7368 1.6 3hr2-a1-m7-cB_3hr2-a1-m9-cB, 3hr2-a1-m8-cB_3hr2-a1-m9-cB
5 3hr2-a1-m8-cB 944 19 0.5385 0.0148 0.7368 1.6 3hr2-a1-m8-cB_3hr2-a1-m9-cB
6 3hr2-a1-m7-cB 944 19 0.5385 0.0148 0.7368 1.6 3hr2-a1-m7-cB_3hr2-a1-m9-cB
7 3hr2-a1-m9-cC 939 30 0.8077 0.0224 0.7000 4.8 3hr2-a1-m9-cA_3hr2-a1-m9-cC
8 3hr2-a1-m9-cA 939 30 0.8077 0.0224 0.7000 4.8 3hr2-a1-m9-cA_3hr2-a1-m9-cC
9 3hqv-a1-m9-cA 939 30 0.8077 0.0224 0.7000 4.8 3hqv-a1-m8-cC_3hqv-a1-m9-cA
10 3hqv-a1-m8-cC 939 30 0.8077 0.0224 0.7000 4.8 3hqv-a1-m8-cC_3hqv-a1-m9-cA
11 3hqv-a1-m3-cA 939 30 0.8077 0.0224 0.7000 4.8 3hqv-a1-m1-cA_3hqv-a1-m3-cA
12 3hqv-a1-m1-cA 939 30 0.8077 0.0224 0.7000 4.8 3hqv-a1-m1-cA_3hqv-a1-m3-cA
13 4zdn-a1-m2-cA 583 26 0.4231 0.0189 0.4231 9.2 4zdn-a1-m1-cA_4zdn-a1-m2-cA
14 4zdn-a1-m1-cA 583 26 0.4231 0.0189 0.4231 9.2 4zdn-a1-m1-cA_4zdn-a1-m2-cA
15 1ksi-a1-m1-cB 641 18 0.2692 0.0109 0.3889 9.9 1ksi-a1-m1-cA_1ksi-a1-m1-cB
16 1ksi-a1-m1-cA 641 18 0.2692 0.0109 0.3889 9.9 1ksi-a1-m1-cA_1ksi-a1-m1-cB

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Reference:
Jacob Schwartz et al.

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