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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=93)
GPGSGTMLPVFCVVEHEHAEFVLVRKDMLFNQLIEMALLSLGYSHSSAAQAKGLIQVGKW
NPVPLSYVTDAPDATVADMLQDVYHVVTLKIQL

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3tuo-a1-m1-cC 93 93 1.0000 1.0000 1.0000 9.38e-66 3tuo-a1-m1-cD_3tuo-a1-m1-cC
2 4q2j-a1-m1-cC 92 91 0.9785 0.9891 1.0000 6.74e-64 4q2j-a1-m1-cC_4q2j-a1-m1-cA
3 4q2j-a1-m1-cA 169 95 1.0000 0.5503 0.9789 4.27e-63 4q2j-a1-m1-cC_4q2j-a1-m1-cA
4 4q2j-a1-m1-cB 94 93 0.9892 0.9787 0.9892 5.12e-63 4q2j-a1-m1-cB_4q2j-a1-m1-cD
5 3tuo-a1-m1-cD 91 91 0.9677 0.9890 0.9890 8.44e-63 3tuo-a1-m1-cD_3tuo-a1-m1-cA, 3tuo-a1-m1-cD_3tuo-a1-m1-cC
6 4q2j-a1-m1-cD 169 94 0.9892 0.5444 0.9787 3.54e-62 4q2j-a1-m1-cB_4q2j-a1-m1-cD
7 3tuo-a1-m1-cA 104 103 0.9892 0.8846 0.8932 2.13e-61 3tuo-a1-m1-cD_3tuo-a1-m1-cA
8 6r8f-a1-m1-cD 230 79 0.2258 0.0913 0.2658 1.5 6r8f-a1-m1-cB_6r8f-a1-m1-cD
9 6r8f-a1-m1-cB 230 79 0.2258 0.0913 0.2658 1.5 6r8f-a1-m1-cB_6r8f-a1-m1-cD
10 1w7c-a1-m2-cA 736 49 0.1828 0.0231 0.3469 6.3 1w7c-a1-m1-cA_1w7c-a1-m2-cA
11 1w7c-a1-m1-cA 736 49 0.1828 0.0231 0.3469 6.3 1w7c-a1-m1-cA_1w7c-a1-m2-cA
12 5xmj-a2-m1-cI 622 72 0.2473 0.0370 0.3194 6.4 5xmj-a2-m1-cE_5xmj-a2-m1-cI
13 5xmj-a2-m1-cE 622 72 0.2473 0.0370 0.3194 6.4 5xmj-a2-m1-cE_5xmj-a2-m1-cI
14 6l85-a1-m1-cA 400 49 0.1720 0.0400 0.3265 7.9 6l85-a1-m1-cA_6l85-a1-m1-cB
15 6l85-a1-m1-cB 401 49 0.1720 0.0399 0.3265 8.0 6l85-a1-m1-cA_6l85-a1-m1-cB

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Reference:
Jacob Schwartz et al.

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