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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=58)
GPHMRTISYSEARQNLSATMMKAVEDHAPILITRQNGEACVLMSLEEYNSLEETAYLL

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 2a6q-a3-m1-cC 86 58 1.0000 0.6744 1.0000 2.08e-38 2a6q-a3-m1-cD_2a6q-a3-m1-cC
2 2a6q-a3-m1-cA 86 58 1.0000 0.6744 1.0000 2.08e-38 2a6q-a3-m1-cD_2a6q-a3-m1-cA
3 2a6q-a3-m1-cD 58 58 1.0000 1.0000 1.0000 2.46e-38 2a6q-a3-m1-cB_2a6q-a3-m1-cD, 2a6q-a3-m1-cD_2a6q-a3-m1-cA, 2a6q-a3-m1-cD_2a6q-a3-m1-cC
4 2a6q-a3-m1-cB 58 58 1.0000 1.0000 1.0000 2.46e-38 2a6q-a3-m1-cB_2a6q-a3-m1-cD
5 3cto-a7-m1-cD 65 53 0.4310 0.3846 0.4717 1.82e-09 3cto-a7-m1-cD_3cto-a7-m1-cA
6 3cto-a5-m1-cD 65 53 0.4310 0.3846 0.4717 1.82e-09 3cto-a5-m1-cD_3cto-a5-m5-cC
7 3d55-a4-m1-cA 68 53 0.4310 0.3676 0.4717 1.92e-09 3d55-a4-m1-cA_3d55-a4-m1-cC
8 3cto-a7-m1-cA 68 53 0.4310 0.3676 0.4717 1.92e-09 3cto-a7-m1-cA_3cto-a7-m1-cB, 3cto-a7-m1-cD_3cto-a7-m1-cA
9 3cto-a6-m5-cA 68 53 0.4310 0.3676 0.4717 1.92e-09 3cto-a6-m5-cA_3cto-a6-m1-cB
10 3cto-a7-m1-cB 83 53 0.4310 0.3012 0.4717 2.12e-09 3cto-a7-m1-cA_3cto-a7-m1-cB
11 3cto-a6-m1-cB 83 53 0.4310 0.3012 0.4717 2.12e-09 3cto-a6-m5-cA_3cto-a6-m1-cB
12 3d55-a4-m2-cB 84 53 0.4310 0.2976 0.4717 2.34e-09 3d55-a4-m2-cB_3d55-a4-m1-cC
13 3oei-a3-m1-cI 83 53 0.4310 0.3012 0.4717 2.44e-09 3oei-a3-m1-cI_3oei-a3-m1-cJ
14 3oei-a3-m1-cJ 86 53 0.4310 0.2907 0.4717 2.56e-09 3oei-a3-m1-cI_3oei-a3-m1-cJ
15 3d55-a4-m1-cC 86 53 0.4310 0.2907 0.4717 2.85e-09 3d55-a4-m1-cA_3d55-a4-m1-cC, 3d55-a4-m2-cB_3d55-a4-m1-cC
16 3cto-a5-m5-cC 86 53 0.4310 0.2907 0.4717 2.85e-09 3cto-a5-m1-cD_3cto-a5-m5-cC
17 6l8e-a1-m1-cB 54 50 0.3793 0.4074 0.4400 2.20e-08 6l8e-a1-m1-cB_6l8e-a1-m1-cA
18 6l8e-a2-m1-cL 57 50 0.3793 0.3860 0.4400 2.73e-08 6l8e-a2-m1-cL_6l8e-a2-m1-cJ
19 6l8e-a2-m1-cJ 59 50 0.3793 0.3729 0.4400 3.22e-08 6l8e-a2-m1-cL_6l8e-a2-m1-cJ
20 6l8e-a1-m1-cA 83 50 0.3793 0.2651 0.4400 6.34e-08 6l8e-a1-m1-cB_6l8e-a1-m1-cA
21 7v6w-a2-m1-cI 56 55 0.3276 0.3393 0.3455 4.17e-05 7v6w-a2-m1-cI_7v6w-a2-m1-cJ, 7v6w-a2-m1-cI_7v6w-a2-m1-cK
22 7v6w-a2-m1-cK 58 55 0.3276 0.3276 0.3455 4.95e-05 7v6w-a2-m1-cI_7v6w-a2-m1-cK
23 7v6w-a2-m1-cJ 85 51 0.3103 0.2118 0.3529 9.54e-05 7v6w-a2-m1-cI_7v6w-a2-m1-cJ
24 3g5o-a1-m1-cD 92 55 0.2931 0.1848 0.3091 0.021 3g5o-a1-m1-cA_3g5o-a1-m1-cD
25 3g5o-a1-m1-cA 92 55 0.2931 0.1848 0.3091 0.021 3g5o-a1-m1-cA_3g5o-a1-m1-cD
26 7cfu-a2-m2-cR 175 27 0.1724 0.0571 0.3704 1.1 7cfu-a2-m2-cQ_7cfu-a2-m2-cR
27 7cfu-a2-m2-cQ 175 27 0.1724 0.0571 0.3704 1.1 7cfu-a2-m1-cJ_7cfu-a2-m2-cQ, 7cfu-a2-m2-cQ_7cfu-a2-m2-cR
28 7cfu-a2-m1-cJ 175 27 0.1724 0.0571 0.3704 1.1 7cfu-a2-m1-cJ_7cfu-a2-m2-cQ
29 7cfu-a1-m1-cU 175 27 0.1724 0.0571 0.3704 1.1 7cfu-a1-m1-cD_7cfu-a1-m1-cU
30 7cfu-a1-m1-cD 175 27 0.1724 0.0571 0.3704 1.1 7cfu-a1-m1-cD_7cfu-a1-m1-cU
31 5xfw-a2-m1-cD 315 31 0.1897 0.0349 0.3548 2.4 5xfw-a2-m1-cC_5xfw-a2-m1-cD
32 5xfw-a2-m1-cC 312 31 0.1897 0.0353 0.3548 2.4 5xfw-a2-m1-cC_5xfw-a2-m1-cD
33 4rv4-a1-m1-cB 211 26 0.1379 0.0379 0.3077 7.3 4rv4-a1-m1-cA_4rv4-a1-m1-cB
34 4rv4-a1-m1-cA 203 26 0.1379 0.0394 0.3077 7.6 4rv4-a1-m1-cA_4rv4-a1-m1-cB
35 7mf4-a1-m2-cA 547 27 0.1897 0.0201 0.4074 9.0 7mf4-a1-m1-cA_7mf4-a1-m2-cA
36 7mf4-a1-m1-cA 547 27 0.1897 0.0201 0.4074 9.0 7mf4-a1-m1-cA_7mf4-a1-m2-cA
37 7dl2-a1-m1-cB 1042 35 0.2241 0.0125 0.3714 9.3 7dl2-a1-m1-cB_7dl2-a1-m1-cA

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Reference:
Jacob Schwartz et al.

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