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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=65)
GPKTLHELLERIGLEEHTSTLLLNGYQTLEDFKELRETHLNELNIMDPQHRAKLLTAAEL
LLDYD

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 6fxf-a1-m2-cA 65 65 1.0000 1.0000 1.0000 5.12e-41 6fxf-a1-m1-cA_6fxf-a1-m2-cA
2 6fxf-a1-m1-cA 65 65 1.0000 1.0000 1.0000 5.12e-41 6fxf-a1-m1-cA_6fxf-a1-m2-cA
3 1b0x-a1-m2-cA 72 58 0.1846 0.1667 0.2069 0.59 1b0x-a1-m1-cA_1b0x-a1-m2-cA
4 1b0x-a1-m1-cA 72 58 0.1846 0.1667 0.2069 0.59 1b0x-a1-m1-cA_1b0x-a1-m2-cA
5 6u7l-a2-m1-cD 443 38 0.2000 0.0293 0.3421 0.59 6u7l-a2-m1-cD_6u7l-a2-m1-cC
6 6u7l-a2-m1-cC 444 38 0.2000 0.0293 0.3421 0.59 6u7l-a2-m1-cD_6u7l-a2-m1-cC
7 3lnc-a1-m1-cB 188 50 0.2462 0.0851 0.3200 1.4 3lnc-a1-m1-cA_3lnc-a1-m1-cB
8 5l1m-a1-m2-cA 140 60 0.2462 0.1143 0.2667 1.6 5l1m-a1-m1-cA_5l1m-a1-m2-cA
9 5l1m-a1-m1-cA 140 60 0.2462 0.1143 0.2667 1.6 5l1m-a1-m1-cA_5l1m-a1-m2-cA
10 2pr1-a2-m2-cB 149 27 0.1846 0.0805 0.4444 2.1 2pr1-a2-m1-cB_2pr1-a2-m2-cB, 2pr1-a2-m2-cB_2pr1-a2-m2-cA
11 2pr1-a2-m1-cB 149 27 0.1846 0.0805 0.4444 2.1 2pr1-a2-m1-cB_2pr1-a2-m2-cB
12 2pr1-a2-m2-cA 152 27 0.1846 0.0789 0.4444 2.2 2pr1-a2-m2-cB_2pr1-a2-m2-cA
13 5goa-a1-m1-cD 3423 16 0.1538 0.0029 0.6250 2.7 5goa-a1-m1-cC_5goa-a1-m1-cD
14 5goa-a1-m1-cC 3423 16 0.1538 0.0029 0.6250 2.7 5goa-a1-m1-cC_5goa-a1-m1-cD
15 6jg3-a1-m1-cD 3477 16 0.1538 0.0029 0.6250 2.8 6jg3-a1-m1-cB_6jg3-a1-m1-cD
16 6jg3-a1-m1-cB 3477 16 0.1538 0.0029 0.6250 2.8 6jg3-a1-m1-cB_6jg3-a1-m1-cD
17 4l6y-a1-m1-cA 445 40 0.2308 0.0337 0.3750 5.5 4l6y-a1-m1-cB_4l6y-a1-m1-cA
18 7jsi-a1-m1-cD 276 33 0.2000 0.0471 0.3939 5.6 7jsi-a1-m1-cC_7jsi-a1-m1-cD
19 7jsi-a1-m1-cC 276 33 0.2000 0.0471 0.3939 5.6 7jsi-a1-m1-cC_7jsi-a1-m1-cD
20 7jsf-a1-m1-cG 276 33 0.2000 0.0471 0.3939 5.6 7jsf-a1-m1-cF_7jsf-a1-m1-cG
21 7jsf-a1-m1-cF 276 33 0.2000 0.0471 0.3939 5.6 7jsf-a1-m1-cF_7jsf-a1-m1-cG
22 5gt7-a1-m1-cB 296 27 0.2000 0.0439 0.4815 8.5 5gt7-a1-m1-cB_5gt7-a1-m1-cA
23 5gv2-a1-m1-cC 307 27 0.2000 0.0423 0.4815 8.7 5gv2-a1-m1-cA_5gv2-a1-m1-cC
24 5gt7-a1-m1-cA 305 27 0.2000 0.0426 0.4815 9.1 5gt7-a1-m1-cB_5gt7-a1-m1-cA
25 5gt7-a2-m1-cD 300 27 0.2000 0.0433 0.4815 9.3 5gt7-a2-m1-cD_5gt7-a2-m1-cC
26 5gv2-a1-m1-cA 304 27 0.2000 0.0428 0.4815 9.4 5gv2-a1-m1-cA_5gv2-a1-m1-cC
27 3lnc-a1-m1-cA 188 49 0.2308 0.0798 0.3061 9.4 3lnc-a1-m1-cA_3lnc-a1-m1-cB

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Reference:
Jacob Schwartz et al.

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