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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=84)
GPLGSLVAIQAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIEILVHTTQD
LINEGGGALLRFVKKVESILYATA

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 4e61-a1-m1-cB 84 84 1.0000 1.0000 1.0000 6.67e-56 4e61-a1-m1-cB_4e61-a1-m1-cA
2 4e61-a1-m1-cA 91 86 0.9881 0.9121 0.9651 8.99e-53 4e61-a1-m1-cB_4e61-a1-m1-cA
3 5m9e-a2-m1-cC 68 69 0.3095 0.3824 0.3768 3.14e-09 5m9e-a2-m1-cC_5m9e-a2-m1-cD
4 5m9e-a2-m1-cD 70 69 0.3095 0.3714 0.3768 3.47e-09 5m9e-a2-m1-cC_5m9e-a2-m1-cD
5 5jv3-a2-m1-cD 68 64 0.3214 0.3971 0.4219 4.85e-07 5jv3-a2-m1-cC_5jv3-a2-m1-cD
6 5jvm-a1-m1-cA 82 71 0.3333 0.3415 0.3944 1.55e-06 5jvm-a1-m1-cB_5jvm-a1-m1-cA
7 5jvm-a1-m1-cB 79 71 0.3333 0.3544 0.3944 1.75e-06 5jvm-a1-m1-cB_5jvm-a1-m1-cA
8 5jvu-a1-m1-cB 69 53 0.2857 0.3478 0.4528 6.74e-06 5jvu-a1-m1-cB_5jvu-a1-m1-cA
9 5jvu-a1-m1-cA 76 53 0.2857 0.3158 0.4528 8.05e-06 5jvu-a1-m1-cB_5jvu-a1-m1-cA
10 5jv3-a2-m1-cC 64 62 0.2976 0.3906 0.4032 1.42e-05 5jv3-a2-m1-cC_5jv3-a2-m1-cD
11 6pf2-a1-m1-cB 150 70 0.3333 0.1867 0.4000 3.08e-05 6pf2-a1-m1-cB_6pf2-a1-m1-cA
12 6pf2-a1-m1-cA 157 70 0.3333 0.1783 0.4000 3.49e-05 6pf2-a1-m1-cB_6pf2-a1-m1-cA
13 6pfp-a2-m1-cD 156 72 0.3333 0.1795 0.3889 5.91e-05 6pfp-a2-m1-cC_6pfp-a2-m1-cD
14 6pfp-a2-m1-cC 156 72 0.3333 0.1795 0.3889 5.91e-05 6pfp-a2-m1-cC_6pfp-a2-m1-cD
15 4xa1-a1-m1-cB 155 58 0.2500 0.1355 0.3621 0.001 4xa1-a1-m1-cA_4xa1-a1-m1-cB
16 4xa1-a1-m1-cA 153 58 0.2500 0.1373 0.3621 0.001 4xa1-a1-m1-cA_4xa1-a1-m1-cB
17 5jvp-a2-m3-cB 88 49 0.2500 0.2386 0.4286 0.001 5jvp-a2-m1-cB_5jvp-a2-m3-cB
18 5jvp-a2-m1-cB 88 49 0.2500 0.2386 0.4286 0.001 5jvp-a2-m1-cB_5jvp-a2-m3-cB
19 3mtu-a2-m1-cD 64 46 0.2143 0.2812 0.3913 0.015 3mtu-a2-m1-cD_3mtu-a2-m1-cB
20 3mtu-a2-m1-cB 65 46 0.2143 0.2769 0.3913 0.016 3mtu-a2-m1-cB_3mtu-a2-m1-cA, 3mtu-a2-m1-cD_3mtu-a2-m1-cB
21 3mtu-a2-m1-cA 72 46 0.2143 0.2500 0.3913 0.020 3mtu-a2-m1-cB_3mtu-a2-m1-cA
22 6yf5-a2-m1-cC 87 83 0.2857 0.2759 0.2892 0.026 6yf5-a2-m1-cD_6yf5-a2-m1-cC
23 6yf5-a2-m1-cD 82 83 0.2857 0.2927 0.2892 0.030 6yf5-a2-m1-cD_6yf5-a2-m1-cC
24 4xa3-a1-m1-cA 142 69 0.2500 0.1479 0.3043 0.068 4xa3-a1-m1-cA_4xa3-a1-m1-cB
25 4xa3-a1-m1-cB 142 44 0.1667 0.0986 0.3182 0.088 4xa3-a1-m1-cA_4xa3-a1-m1-cB
26 5jx1-a1-m2-cA 64 43 0.1905 0.2500 0.3721 0.33 5jx1-a1-m1-cA_5jx1-a1-m2-cA
27 5jx1-a1-m1-cA 64 43 0.1905 0.2500 0.3721 0.33 5jx1-a1-m1-cA_5jx1-a1-m2-cA
28 3ilv-a2-m2-cA 570 26 0.1548 0.0228 0.5000 4.0 3ilv-a2-m1-cA_3ilv-a2-m2-cA
29 3ilv-a2-m1-cA 570 26 0.1548 0.0228 0.5000 4.0 3ilv-a2-m1-cA_3ilv-a2-m2-cA
30 6ca8-a1-m2-cA 731 65 0.2143 0.0246 0.2769 8.1 6ca8-a1-m1-cA_6ca8-a1-m2-cA
31 6ca8-a1-m1-cA 731 65 0.2143 0.0246 0.2769 8.1 6ca8-a1-m1-cA_6ca8-a1-m2-cA

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Reference:
Jacob Schwartz et al.

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