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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=54)
GPLGSPEFREPLIATAVKFLQNSRVRQSPLATRRAFLKKKGLTDEEIDLAFQQS

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3ff5-a1-m1-cB 54 54 1.0000 1.0000 1.0000 7.47e-34 3ff5-a1-m1-cA_3ff5-a1-m1-cB
2 3ff5-a1-m1-cA 54 54 1.0000 1.0000 1.0000 7.47e-34 3ff5-a1-m1-cA_3ff5-a1-m1-cB
3 1w85-a1-m1-cA 358 29 0.2407 0.0363 0.4483 0.61 1w85-a1-m1-cA_1w85-a1-m1-cC
4 1w85-a1-m1-cC 365 29 0.2407 0.0356 0.4483 0.66 1w85-a1-m1-cA_1w85-a1-m1-cC
5 2vee-a2-m1-cD 190 22 0.1852 0.0526 0.4545 4.7 2vee-a2-m1-cB_2vee-a2-m1-cD
6 2vee-a2-m1-cB 190 22 0.1852 0.0526 0.4545 4.7 2vee-a2-m1-cB_2vee-a2-m1-cD
7 3nrr-a1-m1-cA 503 27 0.2778 0.0298 0.5556 4.7 3nrr-a1-m1-cB_3nrr-a1-m1-cA
8 3nrr-a1-m1-cB 501 27 0.2778 0.0299 0.5556 4.9 3nrr-a1-m1-cB_3nrr-a1-m1-cA
9 5yow-a1-m3-cA 425 20 0.1852 0.0235 0.5000 6.1 5yow-a1-m2-cA_5yow-a1-m3-cA
10 5yow-a1-m2-cA 425 20 0.1852 0.0235 0.5000 6.1 5yow-a1-m2-cA_5yow-a1-m3-cA
11 1o4s-a1-m1-cB 384 27 0.2037 0.0286 0.4074 7.5 1o4s-a1-m1-cA_1o4s-a1-m1-cB
12 1o4s-a1-m1-cA 375 27 0.2037 0.0293 0.4074 7.6 1o4s-a1-m1-cA_1o4s-a1-m1-cB
13 4qv2-a1-m1-cA 311 36 0.1852 0.0322 0.2778 9.7 4qv2-a1-m1-cA_4qv2-a1-m1-cB

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Reference:
Jacob Schwartz et al.

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