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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=54)
GPLGSRHCLSQSHRFKGMCVSSNNCANVCRTESFPDGECKSHGLERKCFCKKVC

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 6lcq-a1-m1-cB 54 54 1.0000 1.0000 1.0000 1.66e-34 6lcq-a1-m1-cA_6lcq-a1-m1-cB
2 6lcq-a1-m1-cA 54 54 1.0000 1.0000 1.0000 1.66e-34 6lcq-a1-m1-cA_6lcq-a1-m1-cB
3 7c31-a1-m1-cB 47 49 0.5185 0.5957 0.5714 1.97e-12 7c31-a1-m1-cA_7c31-a1-m1-cB
4 7c31-a1-m1-cA 47 49 0.5185 0.5957 0.5714 1.97e-12 7c31-a1-m1-cA_7c31-a1-m1-cB
5 6mry-a3-m1-cJ 48 50 0.3333 0.3750 0.3600 3.39e-05 6mry-a3-m1-cC_6mry-a3-m1-cJ
6 6mry-a3-m1-cC 47 49 0.3333 0.3830 0.3673 6.14e-05 6mry-a3-m1-cC_6mry-a3-m1-cJ
7 7u23-a1-m1-cE 669 33 0.2407 0.0194 0.3939 0.94 7u23-a1-m1-cE_7u23-a1-m1-cF
8 6c72-a1-m1-cC 579 26 0.2222 0.0207 0.4615 2.1 6c72-a1-m1-cB_6c72-a1-m1-cC
9 6c72-a1-m1-cB 579 26 0.2222 0.0207 0.4615 2.1 6c72-a1-m1-cB_6c72-a1-m1-cC
10 7dd9-a1-m1-cG 1129 33 0.1852 0.0089 0.3030 3.2 7dd9-a1-m1-cA_7dd9-a1-m1-cG, 7dd9-a1-m1-cC_7dd9-a1-m1-cG, 7dd9-a1-m1-cE_7dd9-a1-m1-cG
11 7dd9-a1-m1-cE 1129 33 0.1852 0.0089 0.3030 3.2 7dd9-a1-m1-cE_7dd9-a1-m1-cG
12 7dd9-a1-m1-cC 1129 33 0.1852 0.0089 0.3030 3.2 7dd9-a1-m1-cC_7dd9-a1-m1-cG
13 7dd9-a1-m1-cA 1129 33 0.1852 0.0089 0.3030 3.2 7dd9-a1-m1-cA_7dd9-a1-m1-cG

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Reference:
Jacob Schwartz et al.

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