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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=98)
GPLKPEEHEDILNKLLDPELAQSERTEALQQLRVNYGSFVSEYNDLTKSHEKLEKVRKQL
EAEKMELQSALEEAEASLEHEEGKILRAQLEFNQIKAE

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 5cj1-a1-m1-cB 98 98 1.0000 1.0000 1.0000 3.88e-65 5cj1-a1-m1-cA_5cj1-a1-m1-cB
2 5cj1-a1-m1-cA 98 98 1.0000 1.0000 1.0000 3.88e-65 5cj1-a1-m1-cA_5cj1-a1-m1-cB
3 3oa7-a1-m2-cA 188 55 0.5306 0.2766 0.9455 1.28e-31 3oa7-a1-m1-cA_3oa7-a1-m2-cA
4 3oa7-a1-m1-cA 188 55 0.5306 0.2766 0.9455 1.28e-31 3oa7-a1-m1-cA_3oa7-a1-m2-cA
5 5wme-a1-m1-cC 93 74 0.5510 0.5806 0.7297 1.87e-31 5wme-a1-m1-cD_5wme-a1-m1-cC
6 5wme-a1-m1-cB 92 74 0.5510 0.5870 0.7297 2.03e-31 5wme-a1-m1-cD_5wme-a1-m1-cB
7 5wlq-a1-m2-cA 104 77 0.5714 0.5385 0.7273 2.25e-31 5wlq-a1-m1-cA_5wlq-a1-m2-cA
8 5wlq-a1-m1-cA 104 77 0.5714 0.5385 0.7273 2.25e-31 5wlq-a1-m1-cA_5wlq-a1-m2-cA
9 4iff-a2-m1-cD 81 53 0.4898 0.5926 0.9057 6.43e-31 4iff-a2-m1-cD_4iff-a2-m1-cC
10 4iff-a2-m1-cC 82 53 0.4898 0.5854 0.9057 7.22e-31 4iff-a2-m1-cD_4iff-a2-m1-cC
11 5wjb-a2-m1-cD 121 78 0.5510 0.4463 0.6923 1.62e-30 5wjb-a2-m1-cC_5wjb-a2-m1-cD
12 5wme-a1-m1-cA 91 73 0.5408 0.5824 0.7260 2.42e-30 5wme-a1-m1-cD_5wme-a1-m1-cA
13 6pfp-a2-m1-cD 156 80 0.5918 0.3718 0.7250 2.49e-30 6pfp-a2-m1-cC_6pfp-a2-m1-cD
14 6pfp-a2-m1-cC 156 80 0.5918 0.3718 0.7250 2.49e-30 6pfp-a2-m1-cC_6pfp-a2-m1-cD
15 4xa1-a1-m1-cA 153 80 0.5816 0.3725 0.7125 4.27e-30 4xa1-a1-m1-cA_4xa1-a1-m1-cB
16 4xa1-a1-m1-cB 155 80 0.5816 0.3677 0.7125 4.46e-30 4xa1-a1-m1-cA_4xa1-a1-m1-cB
17 5wjb-a2-m1-cC 112 77 0.5408 0.4732 0.6883 1.36e-29 5wjb-a2-m1-cC_5wjb-a2-m1-cD
18 6pf2-a1-m1-cB 150 48 0.4898 0.3200 1.0000 1.69e-29 6pf2-a1-m1-cB_6pf2-a1-m1-cA
19 6pf2-a1-m1-cA 157 48 0.4898 0.3057 1.0000 2.71e-29 6pf2-a1-m1-cB_6pf2-a1-m1-cA
20 4xa3-a1-m1-cB 142 99 0.6020 0.4155 0.5960 9.56e-29 4xa3-a1-m1-cA_4xa3-a1-m1-cB
21 4xa3-a1-m1-cA 142 99 0.6020 0.4155 0.5960 9.99e-29 4xa3-a1-m1-cA_4xa3-a1-m1-cB
22 5wme-a1-m1-cD 89 71 0.5204 0.5730 0.7183 1.42e-28 5wme-a1-m1-cD_5wme-a1-m1-cA, 5wme-a1-m1-cD_5wme-a1-m1-cB, 5wme-a1-m1-cD_5wme-a1-m1-cC
23 4xa6-a1-m1-cB 146 71 0.5306 0.3562 0.7324 1.30e-24 4xa6-a1-m1-cB_4xa6-a1-m1-cA
24 4xa6-a1-m1-cA 149 74 0.5510 0.3624 0.7297 1.47e-24 4xa6-a1-m1-cB_4xa6-a1-m1-cA
25 3mtu-a1-m1-cF 64 67 0.4694 0.7188 0.6866 1.55e-22 3mtu-a1-m1-cE_3mtu-a1-m1-cF
26 3mtu-a1-m1-cE 64 67 0.4694 0.7188 0.6866 1.55e-22 3mtu-a1-m1-cE_3mtu-a1-m1-cF
27 4xa4-a1-m1-cB 199 21 0.2143 0.1055 1.0000 1.21e-06 4xa4-a1-m1-cB_4xa4-a1-m1-cA
28 4xa4-a1-m1-cA 200 21 0.2143 0.1050 1.0000 1.22e-06 4xa4-a1-m1-cB_4xa4-a1-m1-cA
29 7n61-a1-m1-c0A 467 64 0.1837 0.0385 0.2812 0.44 7n61-a1-m1-c0A_7n61-a1-m1-c0D

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Reference:
Jacob Schwartz et al.

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