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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=50)
GPNYVHTNDGRSIVTDGKPQTDNDTGISYKDANGNKQQINRTDVKEVALE

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 2ra2-a7-m2-cB 55 50 1.0000 0.9091 1.0000 1.64e-31 2ra2-a7-m2-cF_2ra2-a7-m2-cB
2 2ra2-a7-m2-cF 50 50 1.0000 1.0000 1.0000 1.85e-31 2ra2-a7-m2-cF_2ra2-a7-m2-cB
3 3bdu-a1-m1-cE 51 46 0.6200 0.6078 0.6739 1.30e-15 3bdu-a1-m1-cA_3bdu-a1-m1-cE
4 3bdu-a1-m1-cA 51 46 0.6200 0.6078 0.6739 1.30e-15 3bdu-a1-m1-cA_3bdu-a1-m1-cE
5 2rd1-a5-m2-cB 56 45 0.4800 0.4286 0.5333 2.90e-11 2rd1-a5-m1-cB_2rd1-a5-m2-cB
6 2rd1-a5-m1-cB 56 45 0.4800 0.4286 0.5333 2.90e-11 2rd1-a5-m1-cB_2rd1-a5-m2-cB
7 2rb6-a3-m2-cB 52 45 0.3400 0.3269 0.3778 0.004 2rb6-a3-m2-cB_2rb6-a3-m1-cA
8 2rb6-a3-m1-cA 53 45 0.3400 0.3208 0.3778 0.004 2rb6-a3-m2-cB_2rb6-a3-m1-cA
9 3pub-a1-m1-cA 235 19 0.2200 0.0468 0.5789 9.1 3pub-a1-m1-cA_3pub-a1-m1-cB
10 3pub-a1-m1-cB 236 19 0.2200 0.0466 0.5789 9.1 3pub-a1-m1-cA_3pub-a1-m1-cB

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Reference:
Jacob Schwartz et al.

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