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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=23)
GPPGPPGPPGTGPPGPPGPPGPP

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3a1h-a1-m1-cC 23 23 1.0000 1.0000 1.0000 7.64e-04 3a1h-a1-m1-cA_3a1h-a1-m1-cC
2 3a1h-a1-m1-cA 22 22 0.9565 1.0000 1.0000 0.002 3a1h-a1-m1-cA_3a1h-a1-m1-cC
3 2d3h-a2-m1-cD 23 23 0.9565 0.9565 0.9565 0.42 2d3h-a2-m1-cF_2d3h-a2-m1-cD
4 3a19-a3-m1-cC 24 23 0.9565 0.9167 0.9565 0.59 3a19-a3-m1-cB_3a19-a3-m1-cC
5 7umz-a1-m1-cD 3927 13 0.3043 0.0018 0.5385 8.7 7umz-a1-m1-cC_7umz-a1-m1-cD
6 7umz-a1-m1-cC 3927 13 0.3043 0.0018 0.5385 8.7 7umz-a1-m1-cC_7umz-a1-m1-cD
7 7k0t-a1-m1-cD 4105 13 0.3043 0.0017 0.5385 9.3 7k0t-a1-m1-cC_7k0t-a1-m1-cD
8 7k0t-a1-m1-cC 4105 13 0.3043 0.0017 0.5385 9.3 7k0t-a1-m1-cC_7k0t-a1-m1-cD
9 3j8h-a1-m1-cG 3660 22 0.4348 0.0027 0.4545 9.7 3j8h-a1-m1-cE_3j8h-a1-m1-cG
10 3j8h-a1-m1-cE 3660 22 0.4348 0.0027 0.4545 9.7 3j8h-a1-m1-cE_3j8h-a1-m1-cG

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Reference:
Jacob Schwartz et al.

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