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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=65)
GPSCKHCKDDVNRLCRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEW
YCPEC

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3sox-a4-m3-cB 65 65 1.0000 1.0000 1.0000 3.17e-43 3sox-a4-m1-cB_3sox-a4-m3-cB
2 3sox-a4-m1-cB 65 65 1.0000 1.0000 1.0000 3.17e-43 3sox-a4-m1-cB_3sox-a4-m3-cB
3 5szb-a2-m2-cA 115 47 0.3231 0.1826 0.4468 1.99e-08 5szb-a2-m1-cA_5szb-a2-m2-cA
4 5szb-a2-m1-cA 115 47 0.3231 0.1826 0.4468 1.99e-08 5szb-a2-m1-cA_5szb-a2-m2-cA
5 2puy-a1-m1-cB 60 33 0.2615 0.2833 0.5152 3.96e-06 2puy-a1-m1-cA_2puy-a1-m1-cB
6 2puy-a1-m1-cA 59 33 0.2615 0.2881 0.5152 4.01e-06 2puy-a1-m1-cA_2puy-a1-m1-cB
7 4qf3-a3-m1-cB 57 46 0.2615 0.2982 0.3696 8.90e-06 4qf3-a3-m1-cA_4qf3-a3-m1-cB
8 4qf3-a3-m1-cA 57 46 0.2615 0.2982 0.3696 8.90e-06 4qf3-a3-m1-cA_4qf3-a3-m1-cB
9 4qf2-a2-m1-cB 51 47 0.2769 0.3529 0.3830 6.53e-05 4qf2-a2-m1-cB_4qf2-a2-m1-cD
10 4qf2-a2-m1-cD 53 47 0.2769 0.3396 0.3830 6.66e-05 4qf2-a2-m1-cB_4qf2-a2-m1-cD
11 7duf-a1-m1-cB 57 47 0.2308 0.2632 0.3191 7.71e-05 7duf-a1-m1-cB_7duf-a1-m1-cA
12 7duf-a1-m1-cA 62 47 0.2308 0.2419 0.3191 7.91e-05 7duf-a1-m1-cB_7duf-a1-m1-cA
13 5c13-a2-m1-cG 59 50 0.2308 0.2542 0.3000 0.016 5c13-a2-m1-cC_5c13-a2-m1-cG
14 5c13-a2-m1-cC 59 50 0.2308 0.2542 0.3000 0.016 5c13-a2-m1-cC_5c13-a2-m1-cG
15 5xfr-a1-m1-cA 309 41 0.1846 0.0388 0.2927 0.13 5xfr-a1-m1-cB_5xfr-a1-m1-cA
16 4e0t-a3-m1-cD 406 53 0.2462 0.0394 0.3019 0.29 4e0t-a3-m1-cB_4e0t-a3-m1-cD, 4e0t-a3-m1-cC_4e0t-a3-m1-cD, 4e0t-a3-m1-cD_4e0t-a3-m1-cA
17 4e0t-a3-m1-cC 406 53 0.2462 0.0394 0.3019 0.29 4e0t-a3-m1-cC_4e0t-a3-m1-cD
18 4e0t-a3-m1-cB 406 53 0.2462 0.0394 0.3019 0.29 4e0t-a3-m1-cB_4e0t-a3-m1-cD
19 4e0t-a3-m1-cA 408 53 0.2462 0.0392 0.3019 0.29 4e0t-a3-m1-cD_4e0t-a3-m1-cA
20 4njh-a1-m1-cB 209 29 0.1692 0.0526 0.3793 0.35 4njh-a1-m1-cA_4njh-a1-m1-cB
21 4njh-a1-m1-cA 209 29 0.1692 0.0526 0.3793 0.35 4njh-a1-m1-cA_4njh-a1-m1-cB
22 6qmm-a1-m1-cA 277 27 0.1231 0.0289 0.2963 3.1 6qmm-a1-m1-cA_6qmm-a1-m1-cB
23 6qmm-a1-m1-cB 280 27 0.1231 0.0286 0.2963 3.3 6qmm-a1-m1-cA_6qmm-a1-m1-cB
24 2y6e-a1-m1-cD 327 48 0.2462 0.0489 0.3333 3.4 2y6e-a1-m1-cE_2y6e-a1-m1-cD
25 7y3w-a1-m1-cB 428 27 0.1692 0.0257 0.4074 6.0 7y3w-a1-m1-cA_7y3w-a1-m1-cB
26 7y3w-a1-m1-cA 428 27 0.1692 0.0257 0.4074 6.0 7y3w-a1-m1-cA_7y3w-a1-m1-cB

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Reference:
Jacob Schwartz et al.

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