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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=61)
GQLDTHLADLYLLKYDTGLGVYESFICKYLEDSNDYIEPRPLESETVSLRQLIVSVLPSR
P

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 4ksn-a2-m1-cD 61 61 1.0000 1.0000 1.0000 1.80e-39 4ksn-a2-m1-cB_4ksn-a2-m1-cD
2 4ksn-a1-m2-cD 61 61 1.0000 1.0000 1.0000 1.80e-39 4ksn-a1-m1-cB_4ksn-a1-m2-cD
3 4ksn-a1-m1-cD 61 61 1.0000 1.0000 1.0000 1.80e-39 4ksn-a1-m2-cB_4ksn-a1-m1-cD
4 4ksn-a2-m1-cC 63 63 0.9344 0.9048 0.9048 4.41e-34 4ksn-a2-m1-cB_4ksn-a2-m1-cC
5 4ksn-a1-m2-cA 64 64 0.8852 0.8438 0.8438 1.62e-30 4ksn-a1-m1-cA_4ksn-a1-m2-cA
6 4ksn-a1-m1-cA 64 64 0.8852 0.8438 0.8438 1.62e-30 4ksn-a1-m1-cA_4ksn-a1-m2-cA
7 4ksn-a2-m1-cB 52 59 0.8525 1.0000 0.8814 2.40e-29 4ksn-a2-m1-cB_4ksn-a2-m1-cC, 4ksn-a2-m1-cB_4ksn-a2-m1-cD
8 4ksn-a1-m2-cB 52 59 0.8525 1.0000 0.8814 2.40e-29 4ksn-a1-m2-cB_4ksn-a1-m1-cD
9 4ksn-a1-m1-cB 52 59 0.8525 1.0000 0.8814 2.40e-29 4ksn-a1-m1-cB_4ksn-a1-m2-cD

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Reference:
Jacob Schwartz et al.

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