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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=88)
GRFVVWPSELDSRLSRKYGRIVPRSIAVESPRVEEIVRAAEELKFKVIRVEEDKLNLRTF
GMIVLESPYGKSKSLKLIAQKIREFRRR

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3dlu-a1-m1-cC 88 88 1.0000 1.0000 1.0000 2.65e-57 3dlu-a1-m1-cD_3dlu-a1-m1-cC
2 3dlu-a1-m1-cA 95 90 1.0000 0.9263 0.9778 2.74e-55 3dlu-a1-m1-cD_3dlu-a1-m1-cA
3 3dlu-a1-m1-cD 87 88 0.9886 1.0000 0.9886 2.48e-54 3dlu-a1-m1-cD_3dlu-a1-m1-cA, 3dlu-a1-m1-cD_3dlu-a1-m1-cC
4 4ipi-a1-m2-cA 351 40 0.1250 0.0313 0.2750 2.5 4ipi-a1-m1-cA_4ipi-a1-m2-cA
5 4ipi-a1-m1-cA 351 40 0.1250 0.0313 0.2750 2.5 4ipi-a1-m1-cA_4ipi-a1-m2-cA
6 4rpa-a2-m2-cB 306 47 0.1591 0.0458 0.2979 3.2 4rpa-a2-m1-cA_4rpa-a2-m2-cB, 4rpa-a2-m2-cA_4rpa-a2-m2-cB
7 4rpa-a2-m2-cA 306 47 0.1591 0.0458 0.2979 3.2 4rpa-a2-m2-cA_4rpa-a2-m2-cB
8 4rpa-a2-m1-cA 306 47 0.1591 0.0458 0.2979 3.2 4rpa-a2-m1-cA_4rpa-a2-m2-cB
9 6fjw-a1-m2-cA 231 34 0.1250 0.0476 0.3235 4.2 6fjw-a1-m1-cA_6fjw-a1-m2-cA
10 6fjw-a1-m1-cA 231 34 0.1250 0.0476 0.3235 4.2 6fjw-a1-m1-cA_6fjw-a1-m2-cA
11 7f00-a1-m2-cB 468 68 0.2273 0.0427 0.2941 8.2 7f00-a1-m2-cB_7f00-a1-m1-cA, 7f00-a1-m2-cB_7f00-a1-m2-cA
12 7f00-a1-m2-cA 477 68 0.2273 0.0419 0.2941 8.5 7f00-a1-m2-cB_7f00-a1-m2-cA
13 7f00-a1-m1-cA 477 68 0.2273 0.0419 0.2941 8.5 7f00-a1-m2-cB_7f00-a1-m1-cA

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Reference:
Jacob Schwartz et al.

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