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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=48)
GSERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLKQNGLLG

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3vmx-a2-m1-cC 48 48 1.0000 1.0000 1.0000 2.06e-27 3vmx-a2-m1-cD_3vmx-a2-m1-cC
2 3vmx-a2-m1-cD 47 47 0.9792 1.0000 1.0000 1.76e-26 3vmx-a2-m1-cD_3vmx-a2-m1-cC
3 3vyi-a2-m1-cF 49 48 0.7917 0.7755 0.7917 1.16e-19 3vyi-a2-m1-cE_3vyi-a2-m1-cF
4 3a2a-a2-m1-cD 41 41 0.7292 0.8537 0.8537 2.31e-19 3a2a-a2-m1-cC_3a2a-a2-m1-cD
5 3a2a-a2-m1-cC 41 41 0.7292 0.8537 0.8537 2.31e-19 3a2a-a2-m1-cC_3a2a-a2-m1-cD
6 3vyi-a2-m1-cE 46 46 0.7500 0.7826 0.7826 1.12e-17 3vyi-a2-m1-cE_3vyi-a2-m1-cF
7 3vyi-a1-m1-cB 46 46 0.7500 0.7826 0.7826 1.12e-17 3vyi-a1-m1-cA_3vyi-a1-m1-cB
8 3vyi-a1-m1-cA 46 46 0.7500 0.7826 0.7826 1.12e-17 3vyi-a1-m1-cA_3vyi-a1-m1-cB
9 4wwc-a1-m1-cA 213 45 0.2708 0.0610 0.2889 7.8 4wwc-a1-m1-cA_4wwc-a1-m1-cB

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Reference:
Jacob Schwartz et al.

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