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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=82)
GSHMANKRNEALRIESALLNKIAMLGTEKTAEAVGVDKSQISRWKRDWIPKFSMLLAVLE
WGVVDDDMARLARQVAAILTNK

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 1zs4-a1-m1-cB 82 82 1.0000 1.0000 1.0000 3.00e-55 1zs4-a1-m1-cC_1zs4-a1-m1-cB
2 1zs4-a1-m1-cA 82 82 1.0000 1.0000 1.0000 3.00e-55 1zs4-a1-m1-cC_1zs4-a1-m1-cA, 1zs4-a1-m1-cD_1zs4-a1-m1-cA
3 1zs4-a1-m1-cC 79 78 0.9512 0.9873 1.0000 1.98e-51 1zs4-a1-m1-cC_1zs4-a1-m1-cA, 1zs4-a1-m1-cC_1zs4-a1-m1-cB
4 1xwr-a1-m1-cA 79 77 0.9390 0.9747 1.0000 1.05e-50 1xwr-a1-m1-cB_1xwr-a1-m1-cA, 1xwr-a1-m1-cC_1xwr-a1-m1-cA, 1xwr-a1-m1-cD_1xwr-a1-m1-cA
5 1xwr-a1-m1-cD 77 77 0.9390 1.0000 1.0000 1.07e-50 1xwr-a1-m1-cB_1xwr-a1-m1-cD, 1xwr-a1-m1-cC_1xwr-a1-m1-cD, 1xwr-a1-m1-cD_1xwr-a1-m1-cA
6 1xwr-a1-m1-cB 77 77 0.9390 1.0000 1.0000 1.07e-50 1xwr-a1-m1-cB_1xwr-a1-m1-cA, 1xwr-a1-m1-cB_1xwr-a1-m1-cD
7 1xwr-a1-m1-cC 76 76 0.9268 1.0000 1.0000 8.12e-50 1xwr-a1-m1-cC_1xwr-a1-m1-cA, 1xwr-a1-m1-cC_1xwr-a1-m1-cD
8 1zs4-a1-m1-cD 73 73 0.8902 1.0000 1.0000 1.26e-47 1zs4-a1-m1-cD_1zs4-a1-m1-cA
9 3tys-a1-m2-cA 73 30 0.1341 0.1507 0.3667 5.8 3tys-a1-m1-cA_3tys-a1-m2-cA
10 3tys-a1-m1-cA 73 30 0.1341 0.1507 0.3667 5.8 3tys-a1-m1-cA_3tys-a1-m2-cA

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Reference:
Jacob Schwartz et al.

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