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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=63)
GSHMASMKNAKQEHFELDQEWVELMVEAKEANISPEEIRKYLLLNKKSAHPGPAARSHTV
NPF

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 5tmx-a1-m1-cB 63 63 1.0000 1.0000 1.0000 2.08e-42 5tmx-a1-m1-cA_5tmx-a1-m1-cB
2 5tmx-a1-m1-cA 63 63 1.0000 1.0000 1.0000 2.08e-42 5tmx-a1-m1-cA_5tmx-a1-m1-cB
3 5tn2-a1-m1-cD 47 46 0.2222 0.2979 0.3043 1.5 5tn2-a1-m1-cC_5tn2-a1-m1-cD
4 5tn2-a1-m1-cC 47 46 0.2222 0.2979 0.3043 1.5 5tn2-a1-m1-cB_5tn2-a1-m1-cC, 5tn2-a1-m1-cC_5tn2-a1-m1-cD
5 5tn2-a1-m1-cB 47 46 0.2222 0.2979 0.3043 1.5 5tn2-a1-m1-cB_5tn2-a1-m1-cC
6 1b0n-a6-m3-cA 103 31 0.1587 0.0971 0.3226 2.2 1b0n-a6-m1-cA_1b0n-a6-m3-cA
7 1b0n-a6-m1-cA 103 31 0.1587 0.0971 0.3226 2.2 1b0n-a6-m1-cA_1b0n-a6-m3-cA
8 1b0n-a5-m2-cA 103 31 0.1587 0.0971 0.3226 2.2 1b0n-a5-m1-cA_1b0n-a5-m2-cA
9 1b0n-a5-m1-cA 103 31 0.1587 0.0971 0.3226 2.2 1b0n-a5-m1-cA_1b0n-a5-m2-cA
10 3iab-a2-m2-cB 106 42 0.1905 0.1132 0.2857 3.8 3iab-a2-m1-cB_3iab-a2-m2-cB
11 3iab-a2-m1-cB 106 42 0.1905 0.1132 0.2857 3.8 3iab-a2-m1-cB_3iab-a2-m2-cB
12 1wp4-a1-m1-cD 289 25 0.1587 0.0346 0.4000 6.2 1wp4-a1-m1-cA_1wp4-a1-m1-cD, 1wp4-a1-m1-cC_1wp4-a1-m1-cD
13 1wp4-a1-m1-cC 289 25 0.1587 0.0346 0.4000 6.2 1wp4-a1-m1-cC_1wp4-a1-m1-cD
14 1wp4-a1-m1-cA 288 25 0.1587 0.0347 0.4000 6.3 1wp4-a1-m1-cA_1wp4-a1-m1-cD

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Reference:
Jacob Schwartz et al.

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