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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=95)
GSHMMLVLITYDVQTSSMGGTKRLRKVAKACQNYGQRVQNSVFECIVDSTQLTSLKLELT
SLIDEEKDSLRIYRLGNNYKTKVEHIGAKPSPLIF

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 4es1-a1-m2-cA 95 95 1.0000 1.0000 1.0000 8.95e-68 4es1-a1-m1-cA_4es1-a1-m2-cA
2 4es1-a1-m1-cA 95 95 1.0000 1.0000 1.0000 8.95e-68 4es1-a1-m1-cA_4es1-a1-m2-cA
3 8d3q-a1-m1-cF 98 96 0.9579 0.9286 0.9479 1.75e-61 8d3q-a1-m1-cE_8d3q-a1-m1-cF
4 8d3q-a1-m1-cE 98 96 0.9579 0.9286 0.9479 1.75e-61 8d3q-a1-m1-cE_8d3q-a1-m1-cF
5 3oq2-a3-m4-cB 102 100 0.6105 0.5686 0.5800 2.69e-38 3oq2-a3-m1-cA_3oq2-a3-m4-cB, 3oq2-a3-m3-cA_3oq2-a3-m4-cB
6 3oq2-a2-m2-cB 102 100 0.6105 0.5686 0.5800 2.69e-38 3oq2-a2-m2-cA_3oq2-a2-m2-cB
7 3oq2-a3-m3-cA 99 96 0.6000 0.5758 0.5938 1.50e-37 3oq2-a3-m3-cA_3oq2-a3-m4-cB
8 3oq2-a3-m1-cA 99 96 0.6000 0.5758 0.5938 1.50e-37 3oq2-a3-m1-cA_3oq2-a3-m4-cB
9 3oq2-a2-m2-cA 99 96 0.6000 0.5758 0.5938 1.50e-37 3oq2-a2-m2-cA_3oq2-a2-m2-cB
10 5h1o-a1-m1-cA 86 86 0.5579 0.6163 0.6163 7.47e-35 5h1o-a1-m1-cB_5h1o-a1-m1-cA
11 5h1o-a1-m1-cB 83 85 0.5263 0.6024 0.5882 1.62e-30 5h1o-a1-m1-cB_5h1o-a1-m1-cA
12 4qr2-a1-m1-cA 83 83 0.4842 0.5542 0.5542 2.57e-29 4qr2-a1-m1-cB_4qr2-a1-m1-cA
13 4qr2-a1-m1-cB 82 80 0.4737 0.5488 0.5625 1.72e-28 4qr2-a1-m1-cB_4qr2-a1-m1-cA
14 7f84-a1-m1-cB 89 83 0.3579 0.3820 0.4096 1.79e-19 7f84-a1-m1-cA_7f84-a1-m1-cB
15 7f84-a1-m1-cA 89 83 0.3579 0.3820 0.4096 1.79e-19 7f84-a1-m1-cA_7f84-a1-m1-cB
16 5g4d-a1-m2-cA 79 79 0.3158 0.3797 0.3797 1.26e-08 5g4d-a1-m1-cA_5g4d-a1-m2-cA
17 5g4d-a1-m1-cA 79 79 0.3158 0.3797 0.3797 1.26e-08 5g4d-a1-m1-cA_5g4d-a1-m2-cA
18 7cr8-a6-m1-cF 93 74 0.2842 0.2903 0.3649 1.64e-08 7cr8-a6-m1-cE_7cr8-a6-m1-cF
19 7cr8-a6-m1-cE 93 74 0.2842 0.2903 0.3649 1.64e-08 7cr8-a6-m1-cE_7cr8-a6-m1-cF
20 7ei1-a1-m1-cR 84 71 0.2842 0.3214 0.3803 8.73e-08 7ei1-a1-m1-cQ_7ei1-a1-m1-cR
21 7ei1-a1-m1-cQ 84 71 0.2842 0.3214 0.3803 8.73e-08 7ei1-a1-m1-cQ_7ei1-a1-m1-cR
22 6k2e-a1-m1-cA 88 94 0.3474 0.3750 0.3511 4.11e-07 6k2e-a1-m1-cB_6k2e-a1-m1-cA
23 6k2e-a1-m1-cB 87 93 0.3368 0.3678 0.3441 4.08e-06 6k2e-a1-m1-cB_6k2e-a1-m1-cA
24 1zpw-a2-m2-cX 82 87 0.3368 0.3902 0.3678 2.03e-05 1zpw-a2-m1-cX_1zpw-a2-m2-cX
25 1zpw-a2-m1-cX 82 87 0.3368 0.3902 0.3678 2.03e-05 1zpw-a2-m1-cX_1zpw-a2-m2-cX
26 7kfu-a1-m1-cB 96 91 0.2526 0.2500 0.2637 0.037 7kfu-a1-m1-cA_7kfu-a1-m1-cB
27 7kfu-a1-m1-cA 96 91 0.2526 0.2500 0.2637 0.037 7kfu-a1-m1-cA_7kfu-a1-m1-cB
28 7uaj-a1-m1-cC 509 73 0.2211 0.0413 0.2877 0.71 7uaj-a1-m1-cC_7uaj-a1-m1-cD
29 7uaj-a1-m1-cD 509 69 0.2211 0.0413 0.3043 1.1 7uaj-a1-m1-cC_7uaj-a1-m1-cD
30 6ck7-a2-m1-cD 172 62 0.1579 0.0872 0.2419 2.6 6ck7-a2-m1-cC_6ck7-a2-m1-cD
31 6ck7-a2-m1-cC 172 62 0.1579 0.0872 0.2419 2.6 6ck7-a2-m1-cC_6ck7-a2-m1-cD
32 1i7l-a2-m2-cB 309 58 0.1895 0.0583 0.3103 5.6 1i7l-a2-m1-cB_1i7l-a2-m2-cB
33 1i7l-a2-m1-cB 309 58 0.1895 0.0583 0.3103 5.6 1i7l-a2-m1-cB_1i7l-a2-m2-cB
34 1i7n-a2-m2-cB 308 58 0.1895 0.0584 0.3103 5.6 1i7n-a2-m2-cA_1i7n-a2-m2-cB
35 1i7n-a2-m2-cA 308 58 0.1895 0.0584 0.3103 5.6 1i7n-a2-m2-cA_1i7n-a2-m2-cB
36 5fvm-a1-m1-cB 2117 34 0.1368 0.0061 0.3824 6.8 5fvm-a1-m1-cA_5fvm-a1-m1-cB
37 5fvm-a1-m1-cA 2117 34 0.1368 0.0061 0.3824 6.8 5fvm-a1-m1-cA_5fvm-a1-m1-cB

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Reference:
Jacob Schwartz et al.

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