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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=84)
GSHMNDVLVDAYNIAKDSQHVHGVHYIRGRNVGEDVHLAINIYVDADLKVFESDLVADAI
RRKIEAEVDHVRDVHVGVTPVRIA

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 5hok-a2-m1-cD 84 84 1.0000 1.0000 1.0000 1.27e-54 5hok-a2-m3-cA_5hok-a2-m1-cD
2 5hok-a2-m3-cA 83 83 0.9881 1.0000 1.0000 1.06e-53 5hok-a2-m3-cA_5hok-a2-m1-cD
3 6qek-a1-m1-cA 78 64 0.1667 0.1795 0.2188 4.52e-04 6qek-a1-m1-cB_6qek-a1-m1-cA
4 6qek-a1-m1-cB 77 57 0.1548 0.1688 0.2281 0.002 6qek-a1-m1-cB_6qek-a1-m1-cA
5 8f6i-a1-m1-cA 274 70 0.2143 0.0657 0.2571 0.010 8f6i-a1-m1-cA_8f6i-a1-m1-cB
6 8f6i-a1-m1-cB 276 70 0.2143 0.0652 0.2571 0.011 8f6i-a1-m1-cA_8f6i-a1-m1-cB
7 8f6k-a1-m1-cD 287 70 0.2143 0.0627 0.2571 0.013 8f6k-a1-m1-cA_8f6k-a1-m1-cD, 8f6k-a1-m1-cB_8f6k-a1-m1-cD, 8f6k-a1-m1-cC_8f6k-a1-m1-cD
8 8f6k-a1-m1-cB 287 70 0.2143 0.0627 0.2571 0.013 8f6k-a1-m1-cB_8f6k-a1-m1-cD
9 3j1z-a1-m9-cQ 296 70 0.2143 0.0608 0.2571 0.014 3j1z-a1-m1-cP_3j1z-a1-m9-cQ, 3j1z-a1-m12-cP_3j1z-a1-m9-cQ, 3j1z-a1-m9-cP_3j1z-a1-m9-cQ
10 3j1z-a1-m9-cP 296 70 0.2143 0.0608 0.2571 0.014 3j1z-a1-m14-cP_3j1z-a1-m9-cP, 3j1z-a1-m9-cP_3j1z-a1-m9-cQ
11 3j1z-a1-m14-cP 296 70 0.2143 0.0608 0.2571 0.014 3j1z-a1-m14-cP_3j1z-a1-m9-cP
12 3j1z-a1-m12-cP 296 70 0.2143 0.0608 0.2571 0.014 3j1z-a1-m12-cP_3j1z-a1-m9-cQ
13 3j1z-a1-m1-cP 296 70 0.2143 0.0608 0.2571 0.014 3j1z-a1-m1-cP_3j1z-a1-m9-cQ
14 8f6k-a1-m1-cC 279 53 0.1786 0.0538 0.2830 0.030 8f6k-a1-m1-cC_8f6k-a1-m1-cD
15 8f6k-a1-m1-cA 279 53 0.1786 0.0538 0.2830 0.030 8f6k-a1-m1-cA_8f6k-a1-m1-cD
16 3tw9-a3-m1-cA 394 40 0.1667 0.0355 0.3500 1.3 3tw9-a3-m1-cA_3tw9-a3-m2-cC
17 3tw9-a3-m2-cC 395 40 0.1667 0.0354 0.3500 1.3 3tw9-a3-m1-cA_3tw9-a3-m2-cC
18 3twb-a6-m8-cD 416 40 0.1667 0.0337 0.3500 1.3 3twb-a6-m8-cD_3twb-a6-m1-cC, 3twb-a6-m8-cD_3twb-a6-m8-cC
19 3twb-a6-m8-cC 417 40 0.1667 0.0336 0.3500 1.3 3twb-a6-m8-cD_3twb-a6-m8-cC
20 3twb-a6-m1-cC 417 40 0.1667 0.0336 0.3500 1.3 3twb-a6-m8-cD_3twb-a6-m1-cC
21 4kp2-a1-m2-cB 418 51 0.1905 0.0383 0.3137 1.4 4kp2-a1-m1-cA_4kp2-a1-m2-cB
22 4kp2-a1-m1-cA 418 51 0.1905 0.0383 0.3137 1.4 4kp2-a1-m1-cA_4kp2-a1-m2-cB
23 4ksn-a2-m1-cB 52 49 0.2024 0.3269 0.3469 1.5 4ksn-a2-m1-cB_4ksn-a2-m1-cC, 4ksn-a2-m1-cB_4ksn-a2-m1-cD
24 4ksn-a1-m2-cB 52 49 0.2024 0.3269 0.3469 1.5 4ksn-a1-m2-cB_4ksn-a1-m1-cD
25 4ksn-a1-m1-cB 52 49 0.2024 0.3269 0.3469 1.5 4ksn-a1-m1-cB_4ksn-a1-m2-cD
26 1p1c-a1-m1-cB 193 26 0.0833 0.0363 0.2692 2.4 1p1c-a1-m1-cA_1p1c-a1-m1-cB
27 1p1c-a1-m1-cA 193 26 0.0833 0.0363 0.2692 2.4 1p1c-a1-m1-cA_1p1c-a1-m1-cB
28 6xg8-a1-m1-cB 351 35 0.1667 0.0399 0.4000 4.2 6xg8-a1-m1-cB_6xg8-a1-m1-cA
29 3h90-a1-m1-cC 283 44 0.1429 0.0424 0.2727 4.5 3h90-a1-m1-cA_3h90-a1-m1-cC
30 3h90-a1-m1-cA 283 44 0.1429 0.0424 0.2727 4.5 3h90-a1-m1-cA_3h90-a1-m1-cC
31 2x06-a4-m1-cB 335 20 0.1190 0.0299 0.5000 5.4 2x06-a4-m1-cA_2x06-a4-m1-cB
32 2x06-a4-m1-cA 335 20 0.1190 0.0299 0.5000 5.4 2x06-a4-m1-cA_2x06-a4-m1-cB
33 7za4-a1-m1-cA 219 35 0.1667 0.0639 0.4000 5.7 7za4-a1-m1-cC_7za4-a1-m1-cA
34 7za4-a1-m1-cC 200 35 0.1667 0.0700 0.4000 6.2 7za4-a1-m1-cC_7za4-a1-m1-cA
35 4r9o-a1-m2-cB 293 53 0.1667 0.0478 0.2642 6.7 4r9o-a1-m2-cB_4r9o-a1-m2-cC
36 4r9o-a1-m2-cC 295 53 0.1667 0.0475 0.2642 6.7 4r9o-a1-m1-cC_4r9o-a1-m2-cC, 4r9o-a1-m2-cB_4r9o-a1-m2-cC
37 4r9o-a1-m1-cC 295 53 0.1667 0.0475 0.2642 6.7 4r9o-a1-m1-cC_4r9o-a1-m2-cC
38 2ph0-a1-m1-cB 158 97 0.2619 0.1392 0.2268 7.5 2ph0-a1-m1-cA_2ph0-a1-m1-cB
39 3mqg-a1-m1-cB 190 48 0.1429 0.0632 0.2500 8.7 3mqg-a1-m1-cA_3mqg-a1-m1-cB
40 3mqg-a1-m1-cA 190 48 0.1429 0.0632 0.2500 8.7 3mqg-a1-m1-cA_3mqg-a1-m1-cB

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Reference:
Jacob Schwartz et al.

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