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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=70)
GSHMTSEQFEYHLTGKEILEKEFKTGLRGYSPEDVDEFLDMVIKDYSTFTQEIEALQAEN
IRLVQELDNA

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 4ug1-a1-m1-cA 70 70 1.0000 1.0000 1.0000 2.47e-47 4ug1-a1-m1-cA_4ug1-a1-m1-cB
2 4ug1-a1-m1-cB 73 70 1.0000 0.9589 1.0000 3.27e-47 4ug1-a1-m1-cA_4ug1-a1-m1-cB
3 6gp7-a1-m1-cB 59 56 0.5571 0.6610 0.6964 4.18e-23 6gp7-a1-m1-cA_6gp7-a1-m1-cB
4 6gp7-a1-m1-cA 58 55 0.5571 0.6724 0.7091 5.66e-23 6gp7-a1-m1-cA_6gp7-a1-m1-cB
5 6gqa-a1-m1-cB 60 55 0.3571 0.4167 0.4545 1.44e-09 6gqa-a1-m1-cC_6gqa-a1-m1-cB
6 6gqa-a1-m1-cD 58 54 0.3429 0.4138 0.4444 5.58e-09 6gqa-a1-m1-cC_6gqa-a1-m1-cD
7 6gqa-a1-m1-cC 58 54 0.3429 0.4138 0.4444 5.58e-09 6gqa-a1-m1-cC_6gqa-a1-m1-cB, 6gqa-a1-m1-cC_6gqa-a1-m1-cD
8 2wuj-a1-m1-cB 50 47 0.2571 0.3600 0.3830 7.99e-04 2wuj-a1-m1-cA_2wuj-a1-m1-cB
9 2wuj-a1-m1-cA 50 47 0.2571 0.3600 0.3830 7.99e-04 2wuj-a1-m1-cA_2wuj-a1-m1-cB
10 6lfa-a1-m2-cA 70 42 0.2286 0.2286 0.3810 0.20 6lfa-a1-m1-cA_6lfa-a1-m2-cA, 6lfa-a1-m2-cB_6lfa-a1-m2-cA
11 6lfa-a1-m1-cA 70 42 0.2286 0.2286 0.3810 0.20 6lfa-a1-m1-cA_6lfa-a1-m2-cA
12 6lfa-a1-m2-cB 62 42 0.2286 0.2581 0.3810 0.20 6lfa-a1-m1-cB_6lfa-a1-m2-cB, 6lfa-a1-m2-cB_6lfa-a1-m2-cA
13 6lfa-a1-m1-cB 62 42 0.2286 0.2581 0.3810 0.20 6lfa-a1-m1-cB_6lfa-a1-m2-cB
14 5j0k-a1-m1-cB 73 70 0.3429 0.3288 0.3429 2.5 5j0k-a1-m1-cB_5j0k-a1-m1-cA
15 5j0k-a1-m1-cA 74 70 0.3429 0.3243 0.3429 2.7 5j0k-a1-m1-cB_5j0k-a1-m1-cA
16 2dc0-a1-m1-cB 432 54 0.2429 0.0394 0.3148 4.4 2dc0-a1-m1-cA_2dc0-a1-m1-cB
17 2dc0-a1-m1-cA 432 54 0.2429 0.0394 0.3148 4.4 2dc0-a1-m1-cA_2dc0-a1-m1-cB
18 1jad-a1-m1-cB 235 34 0.1429 0.0426 0.2941 5.2 1jad-a1-m1-cA_1jad-a1-m1-cB
19 1jad-a1-m1-cA 235 34 0.1429 0.0426 0.2941 5.2 1jad-a1-m1-cA_1jad-a1-m1-cB
20 6sl0-a1-m1-cB 2638 36 0.2000 0.0053 0.3889 8.6 6sl0-a1-m1-cA_6sl0-a1-m1-cB
21 6sl0-a1-m1-cA 2638 36 0.2000 0.0053 0.3889 8.6 6sl0-a1-m1-cA_6sl0-a1-m1-cB
22 6g84-a1-m2-cB 368 36 0.1714 0.0326 0.3333 8.7 6g84-a1-m1-cA_6g84-a1-m2-cB, 6g84-a1-m1-cB_6g84-a1-m2-cB, 6g84-a1-m2-cA_6g84-a1-m2-cB
23 6g84-a1-m1-cB 368 36 0.1714 0.0326 0.3333 8.7 6g84-a1-m1-cB_6g84-a1-m2-cB
24 6g84-a1-m2-cA 356 36 0.1714 0.0337 0.3333 8.8 6g84-a1-m2-cA_6g84-a1-m2-cB
25 6g84-a1-m1-cA 356 36 0.1714 0.0337 0.3333 8.8 6g84-a1-m1-cA_6g84-a1-m2-cB

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Reference:
Jacob Schwartz et al.

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