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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=88)
GSHMYVIVVYDVNVERVNRVHKLLKTYLFWRQNSVFEGELSKAQLYELEMRLKRIVKEDD
SVLIYIFPGKNFDLHVVGRDKSPVEMII

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 6k2e-a1-m1-cA 88 88 1.0000 1.0000 1.0000 1.75e-60 6k2e-a1-m1-cB_6k2e-a1-m1-cA
2 6k2e-a1-m1-cB 87 87 0.9886 1.0000 1.0000 1.78e-59 6k2e-a1-m1-cB_6k2e-a1-m1-cA
3 7ei1-a1-m1-cR 84 88 0.4659 0.4881 0.4659 3.58e-18 7ei1-a1-m1-cQ_7ei1-a1-m1-cR
4 7ei1-a1-m1-cQ 84 88 0.4659 0.4881 0.4659 3.58e-18 7ei1-a1-m1-cQ_7ei1-a1-m1-cR
5 5g4d-a1-m2-cA 79 63 0.3977 0.4430 0.5556 1.93e-16 5g4d-a1-m1-cA_5g4d-a1-m2-cA
6 5g4d-a1-m1-cA 79 63 0.3977 0.4430 0.5556 1.93e-16 5g4d-a1-m1-cA_5g4d-a1-m2-cA
7 4qr2-a1-m1-cB 82 80 0.3523 0.3780 0.3875 2.42e-07 4qr2-a1-m1-cB_4qr2-a1-m1-cA
8 4qr2-a1-m1-cA 83 80 0.3523 0.3735 0.3875 2.53e-07 4qr2-a1-m1-cB_4qr2-a1-m1-cA
9 4es1-a1-m2-cA 95 94 0.3750 0.3474 0.3511 3.80e-07 4es1-a1-m1-cA_4es1-a1-m2-cA
10 4es1-a1-m1-cA 95 94 0.3750 0.3474 0.3511 3.80e-07 4es1-a1-m1-cA_4es1-a1-m2-cA
11 7cr8-a6-m1-cF 93 70 0.2841 0.2688 0.3571 5.44e-07 7cr8-a6-m1-cE_7cr8-a6-m1-cF
12 7cr8-a6-m1-cE 93 70 0.2841 0.2688 0.3571 5.44e-07 7cr8-a6-m1-cE_7cr8-a6-m1-cF
13 8d3q-a1-m1-cF 98 81 0.3068 0.2755 0.3333 5.39e-05 8d3q-a1-m1-cE_8d3q-a1-m1-cF
14 8d3q-a1-m1-cE 98 81 0.3068 0.2755 0.3333 5.39e-05 8d3q-a1-m1-cE_8d3q-a1-m1-cF
15 7mid-a1-m1-cC 95 87 0.2955 0.2737 0.2989 2.93e-04 7mid-a1-m1-cD_7mid-a1-m1-cC
16 7mid-a1-m1-cD 91 87 0.2955 0.2857 0.2989 3.21e-04 7mid-a1-m1-cD_7mid-a1-m1-cC
17 3oq2-a3-m3-cA 99 75 0.2614 0.2323 0.3067 0.009 3oq2-a3-m3-cA_3oq2-a3-m4-cB
18 3oq2-a3-m1-cA 99 75 0.2614 0.2323 0.3067 0.009 3oq2-a3-m1-cA_3oq2-a3-m4-cB
19 3oq2-a2-m2-cA 99 75 0.2614 0.2323 0.3067 0.009 3oq2-a2-m2-cA_3oq2-a2-m2-cB
20 3oq2-a3-m4-cB 102 75 0.2614 0.2255 0.3067 0.010 3oq2-a3-m1-cA_3oq2-a3-m4-cB, 3oq2-a3-m3-cA_3oq2-a3-m4-cB
21 3oq2-a2-m2-cB 102 75 0.2614 0.2255 0.3067 0.010 3oq2-a2-m2-cA_3oq2-a2-m2-cB
22 2ivy-a1-m2-cA 88 72 0.2841 0.2841 0.3472 0.022 2ivy-a1-m1-cA_2ivy-a1-m2-cA
23 2ivy-a1-m1-cA 88 72 0.2841 0.2841 0.3472 0.022 2ivy-a1-m1-cA_2ivy-a1-m2-cA
24 2wzi-a1-m1-cB 636 44 0.1250 0.0173 0.2500 1.0 2wzi-a1-m1-cB_2wzi-a1-m1-cA

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Reference:
Jacob Schwartz et al.

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