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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=92)
GSLQLWQFLVTLLDDPANAHFIAWTGRGMEFKLIEPEEVARRWGIQKNRPAMNYDKLSRS
LRYYYEKGIMQKVAGERYVYKFVCDPDALFSM

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 5ilv-a2-m2-cA 92 92 1.0000 1.0000 1.0000 8.60e-67 5ilv-a2-m1-cA_5ilv-a2-m2-cA
2 5ilv-a2-m1-cA 92 92 1.0000 1.0000 1.0000 8.60e-67 5ilv-a2-m1-cA_5ilv-a2-m2-cA
3 4uuv-a2-m1-cG 95 91 0.9348 0.9053 0.9451 2.87e-62 4uuv-a2-m1-cD_4uuv-a2-m1-cG
4 4uuv-a2-m1-cD 95 91 0.9348 0.9053 0.9451 2.87e-62 4uuv-a2-m1-cD_4uuv-a2-m1-cG
5 3wu0-a1-m1-cB 136 90 0.6196 0.4191 0.6333 3.13e-39 3wu0-a1-m1-cB_3wu0-a1-m1-cA
6 6dat-a2-m1-cD 135 90 0.6196 0.4222 0.6333 3.65e-39 6dat-a2-m1-cC_6dat-a2-m1-cD
7 6dat-a2-m1-cC 135 90 0.6196 0.4222 0.6333 3.65e-39 6dat-a2-m1-cC_6dat-a2-m1-cD
8 3wu0-a1-m1-cA 140 90 0.6196 0.4071 0.6333 3.72e-39 3wu0-a1-m1-cB_3wu0-a1-m1-cA
9 1gvj-a1-m1-cA 141 90 0.6196 0.4043 0.6333 3.83e-39 1gvj-a1-m1-cA_1gvj-a1-m1-cB
10 1gvj-a1-m1-cB 146 90 0.6196 0.3904 0.6333 5.00e-39 1gvj-a1-m1-cA_1gvj-a1-m1-cB
11 2nny-a1-m1-cB 129 90 0.6087 0.4341 0.6222 1.58e-38 2nny-a1-m1-cA_2nny-a1-m1-cB
12 2nny-a1-m1-cA 129 90 0.6087 0.4341 0.6222 1.58e-38 2nny-a1-m1-cA_2nny-a1-m1-cB
13 5e8i-a2-m1-cJ 93 82 0.5761 0.5699 0.6463 6.10e-36 5e8i-a2-m1-cD_5e8i-a2-m1-cJ
14 5e8i-a2-m1-cD 93 82 0.5761 0.5699 0.6463 6.10e-36 5e8i-a2-m1-cD_5e8i-a2-m1-cJ
15 2ypr-a1-m1-cA 96 82 0.5870 0.5625 0.6585 3.60e-35 2ypr-a1-m1-cB_2ypr-a1-m1-cA
16 1dux-a1-m1-cF 86 86 0.5543 0.5930 0.5930 1.56e-34 1dux-a1-m1-cC_1dux-a1-m1-cF
17 1dux-a1-m1-cC 86 86 0.5543 0.5930 0.5930 1.56e-34 1dux-a1-m1-cC_1dux-a1-m1-cF
18 5ybc-a1-m1-cC 91 80 0.5435 0.5495 0.6250 1.84e-34 5ybc-a1-m1-cC_5ybc-a1-m1-cA
19 5ybc-a1-m1-cA 92 80 0.5435 0.5435 0.6250 2.23e-34 5ybc-a1-m1-cC_5ybc-a1-m1-cA
20 2ypr-a1-m1-cB 92 80 0.5761 0.5761 0.6625 3.28e-34 2ypr-a1-m1-cB_2ypr-a1-m1-cA
21 4hpf-a1-m2-cB 543 35 0.1739 0.0295 0.4571 1.1 4hpf-a1-m2-cB_4hpf-a1-m2-cA
22 4hpf-a1-m2-cA 548 35 0.1739 0.0292 0.4571 1.1 4hpf-a1-m2-cB_4hpf-a1-m2-cA
23 7bpo-a1-m1-cA 165 66 0.1957 0.1091 0.2727 2.1 7bpo-a1-m1-cB_7bpo-a1-m1-cA
24 7bpo-a1-m1-cB 164 66 0.1957 0.1098 0.2727 2.2 7bpo-a1-m1-cB_7bpo-a1-m1-cA
25 4prs-a1-m1-cB 227 54 0.1848 0.0749 0.3148 5.0 4prs-a1-m1-cA_4prs-a1-m1-cB
26 4psh-a1-m1-cA 225 54 0.1848 0.0756 0.3148 5.1 4psh-a1-m1-cA_4psh-a1-m1-cB
27 4psh-a1-m1-cB 226 54 0.1848 0.0752 0.3148 5.2 4psh-a1-m1-cA_4psh-a1-m1-cB
28 4prs-a1-m1-cA 226 54 0.1848 0.0752 0.3148 5.2 4prs-a1-m1-cA_4prs-a1-m1-cB
29 3gjb-a3-m2-cA 260 33 0.1522 0.0538 0.4242 6.2 3gjb-a3-m2-cA_3gjb-a3-m2-cB
30 3gjb-a3-m1-cA 260 33 0.1522 0.0538 0.4242 6.2 3gjb-a3-m1-cA_3gjb-a3-m2-cB
31 3gjb-a3-m2-cB 271 33 0.1522 0.0517 0.4242 6.2 3gjb-a3-m1-cA_3gjb-a3-m2-cB, 3gjb-a3-m2-cA_3gjb-a3-m2-cB
32 5a96-a1-m3-cA 249 55 0.1630 0.0602 0.2727 6.4 5a96-a1-m2-cA_5a96-a1-m3-cA
33 5a96-a1-m2-cA 249 55 0.1630 0.0602 0.2727 6.4 5a96-a1-m2-cA_5a96-a1-m3-cA

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Reference:
Jacob Schwartz et al.

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