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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=98)
GSWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIR
NLDNGGFYISPRITFPGLHELVRHYTNASDGLCTRLSR

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 1cwe-a1-m1-cC 98 98 1.0000 1.0000 1.0000 2.77e-70 1cwe-a1-m1-cA_1cwe-a1-m1-cC
2 1cwe-a1-m1-cA 98 98 1.0000 1.0000 1.0000 2.77e-70 1cwe-a1-m1-cA_1cwe-a1-m1-cC
3 1bhh-a1-m1-cA 104 96 0.9796 0.9231 1.0000 9.14e-69 1bhh-a1-m1-cB_1bhh-a1-m1-cA
4 1bhh-a1-m1-cB 103 96 0.9796 0.9320 1.0000 1.04e-68 1bhh-a1-m1-cB_1bhh-a1-m1-cA
5 1x27-a1-m1-cF 163 96 0.9796 0.5890 1.0000 4.56e-68 1x27-a1-m1-cA_1x27-a1-m1-cF, 1x27-a1-m1-cD_1x27-a1-m1-cF
6 1x27-a1-m1-cD 163 96 0.9796 0.5890 1.0000 4.56e-68 1x27-a1-m1-cD_1x27-a1-m1-cF
7 1x27-a1-m1-cA 163 96 0.9796 0.5890 1.0000 4.56e-68 1x27-a1-m1-cA_1x27-a1-m1-cF
8 4u5w-a1-m1-cB 163 95 0.7041 0.4233 0.7263 7.64e-48 4u5w-a1-m1-cD_4u5w-a1-m1-cB
9 2hck-a1-m1-cB 437 95 0.7041 0.1579 0.7263 1.34e-46 2hck-a1-m1-cA_2hck-a1-m1-cB
10 2hck-a1-m1-cA 437 95 0.7041 0.1579 0.7263 1.34e-46 2hck-a1-m1-cA_2hck-a1-m1-cB
11 4u5w-a1-m1-cD 160 95 0.6735 0.4125 0.6947 3.59e-43 4u5w-a1-m1-cD_4u5w-a1-m1-cB
12 4u17-a2-m2-cB 102 95 0.5816 0.5588 0.6000 3.14e-39 4u17-a2-m1-cB_4u17-a2-m2-cB
13 4u17-a2-m1-cB 102 95 0.5816 0.5588 0.6000 3.14e-39 4u17-a2-m1-cB_4u17-a2-m2-cB
14 1f1w-a3-m3-cA 104 95 0.5204 0.4904 0.5368 5.33e-34 1f1w-a3-m1-cA_1f1w-a3-m3-cA
15 1f1w-a3-m1-cA 104 95 0.5204 0.4904 0.5368 5.33e-34 1f1w-a3-m1-cA_1f1w-a3-m3-cA
16 1f1w-a2-m2-cA 104 95 0.5204 0.4904 0.5368 5.33e-34 1f1w-a2-m1-cA_1f1w-a2-m2-cA
17 1f1w-a2-m1-cA 104 95 0.5204 0.4904 0.5368 5.33e-34 1f1w-a2-m1-cA_1f1w-a2-m2-cA
18 1bkl-a1-m2-cA 110 95 0.5102 0.4545 0.5263 1.24e-33 1bkl-a1-m1-cA_1bkl-a1-m2-cA
19 1bkl-a1-m1-cA 110 95 0.5102 0.4545 0.5263 1.24e-33 1bkl-a1-m1-cA_1bkl-a1-m2-cA
20 1a1b-a1-m1-cA 105 95 0.5102 0.4762 0.5263 2.52e-33 1a1b-a1-m1-cB_1a1b-a1-m1-cA
21 1a1b-a1-m1-cB 104 95 0.5102 0.4808 0.5263 2.85e-33 1a1b-a1-m1-cB_1a1b-a1-m1-cA
22 1opl-a3-m2-cA 451 95 0.4184 0.0909 0.4316 9.95e-14 1opl-a3-m1-cA_1opl-a3-m2-cA
23 1opl-a3-m1-cA 451 95 0.4184 0.0909 0.4316 9.95e-14 1opl-a3-m1-cA_1opl-a3-m2-cA
24 1k9a-a7-m1-cC 438 94 0.3980 0.0890 0.4149 2.31e-12 1k9a-a7-m2-cD_1k9a-a7-m1-cC
25 1r1s-a5-m1-cA 96 87 0.3367 0.3438 0.3793 3.81e-10 1r1s-a5-m1-cA_1r1s-a5-m1-cE
26 1r1s-a5-m1-cE 99 87 0.3367 0.3333 0.3793 4.03e-10 1r1s-a5-m1-cA_1r1s-a5-m1-cE
27 3ps5-a2-m2-cA 529 94 0.4184 0.0775 0.4362 3.80e-09 3ps5-a2-m1-cA_3ps5-a2-m2-cA
28 3ps5-a2-m2-cA 529 87 0.3163 0.0586 0.3563 0.002 3ps5-a2-m1-cA_3ps5-a2-m2-cA
29 3ps5-a2-m1-cA 529 94 0.4184 0.0775 0.4362 3.80e-09 3ps5-a2-m1-cA_3ps5-a2-m2-cA
30 3ps5-a2-m1-cA 529 87 0.3163 0.0586 0.3563 0.002 3ps5-a2-m1-cA_3ps5-a2-m2-cA
31 1k9a-a7-m2-cD 433 94 0.3776 0.0855 0.3936 5.83e-09 1k9a-a7-m2-cD_1k9a-a7-m1-cC
32 3s9k-a2-m2-cA 114 99 0.3061 0.2632 0.3030 7.25e-09 3s9k-a2-m1-cA_3s9k-a2-m2-cA
33 3s9k-a2-m1-cA 114 99 0.3061 0.2632 0.3030 7.25e-09 3s9k-a2-m1-cA_3s9k-a2-m2-cA
34 1a81-a1-m1-cK 220 96 0.3163 0.1409 0.3229 1.06e-08 1a81-a1-m1-cG_1a81-a1-m1-cK, 1a81-a1-m1-cK_1a81-a1-m1-cI
35 1a81-a1-m1-cK 220 95 0.3265 0.1455 0.3368 2.79e-08 1a81-a1-m1-cG_1a81-a1-m1-cK, 1a81-a1-m1-cK_1a81-a1-m1-cI
36 1a81-a1-m1-cG 220 96 0.3163 0.1409 0.3229 1.06e-08 1a81-a1-m1-cG_1a81-a1-m1-cK
37 1a81-a1-m1-cG 220 95 0.3265 0.1455 0.3368 2.79e-08 1a81-a1-m1-cG_1a81-a1-m1-cK
38 1a81-a1-m1-cI 254 96 0.3163 0.1220 0.3229 1.42e-08 1a81-a1-m1-cK_1a81-a1-m1-cI
39 1a81-a1-m1-cI 254 95 0.3265 0.1260 0.3368 2.79e-08 1a81-a1-m1-cK_1a81-a1-m1-cI
40 2ci8-a1-m2-cA 98 86 0.3163 0.3163 0.3605 7.42e-08 2ci8-a1-m1-cA_2ci8-a1-m2-cA
41 2ci8-a1-m1-cA 98 86 0.3163 0.3163 0.3605 7.42e-08 2ci8-a1-m1-cA_2ci8-a1-m2-cA
42 2aug-a2-m3-cB 108 64 0.2143 0.1944 0.3281 8.04e-08 2aug-a2-m1-cB_2aug-a2-m3-cB
43 2aug-a2-m1-cB 108 64 0.2143 0.1944 0.3281 8.04e-08 2aug-a2-m1-cB_2aug-a2-m3-cB
44 3us4-a2-m2-cA 94 96 0.3265 0.3404 0.3333 3.00e-07 3us4-a2-m1-cA_3us4-a2-m2-cA
45 3us4-a2-m1-cA 94 96 0.3265 0.3404 0.3333 3.00e-07 3us4-a2-m1-cA_3us4-a2-m2-cA
46 4wwq-a1-m1-cA 112 57 0.2041 0.1786 0.3509 6.72e-04 4wwq-a1-m1-cA_4wwq-a1-m1-cB
47 2qms-a2-m2-cD 113 57 0.2041 0.1770 0.3509 7.18e-04 2qms-a2-m1-cB_2qms-a2-m2-cD
48 2qms-a2-m1-cB 113 57 0.2041 0.1770 0.3509 7.18e-04 2qms-a2-m1-cB_2qms-a2-m2-cD
49 4wwq-a1-m1-cB 119 69 0.2347 0.1933 0.3333 7.29e-04 4wwq-a1-m1-cA_4wwq-a1-m1-cB
50 1rqq-a1-m1-cD 83 84 0.2755 0.3253 0.3214 0.002 1rqq-a1-m1-cC_1rqq-a1-m1-cD
51 1rqq-a1-m1-cC 83 84 0.2755 0.3253 0.3214 0.002 1rqq-a1-m1-cC_1rqq-a1-m1-cD
52 1rpy-a2-m2-cB 85 41 0.1837 0.2118 0.4390 0.005 1rpy-a2-m1-cB_1rpy-a2-m2-cB
53 1rpy-a2-m1-cB 85 41 0.1837 0.2118 0.4390 0.005 1rpy-a2-m1-cB_1rpy-a2-m2-cB
54 1d1z-a2-m1-cB 94 37 0.1735 0.1809 0.4595 0.005 1d1z-a2-m1-cB_1d1z-a2-m1-cD
55 1nrv-a1-m1-cB 100 79 0.2041 0.2000 0.2532 0.006 1nrv-a1-m1-cA_1nrv-a1-m1-cB
56 1nrv-a1-m1-cA 100 79 0.2041 0.2000 0.2532 0.006 1nrv-a1-m1-cA_1nrv-a1-m1-cB
57 1d1z-a2-m2-cA 101 74 0.2347 0.2277 0.3108 0.007 1d1z-a2-m1-cD_1d1z-a2-m2-cA
58 1d1z-a2-m1-cD 101 74 0.2347 0.2277 0.3108 0.007 1d1z-a2-m1-cB_1d1z-a2-m1-cD, 1d1z-a2-m1-cD_1d1z-a2-m2-cA
59 1d1z-a1-m1-cD 101 74 0.2347 0.2277 0.3108 0.007 1d1z-a1-m1-cC_1d1z-a1-m1-cD
60 1d1z-a1-m1-cC 101 74 0.2347 0.2277 0.3108 0.007 1d1z-a1-m1-cC_1d1z-a1-m1-cD
61 7mp3-a1-m1-cA 102 57 0.1939 0.1863 0.3333 0.017 7mp3-a1-m1-cB_7mp3-a1-m1-cA
62 4xi2-a1-m2-cA 421 94 0.2653 0.0618 0.2766 0.021 4xi2-a1-m1-cA_4xi2-a1-m2-cA
63 4xi2-a1-m1-cA 421 94 0.2653 0.0618 0.2766 0.021 4xi2-a1-m1-cA_4xi2-a1-m2-cA
64 7mp3-a1-m1-cB 97 57 0.2041 0.2062 0.3509 0.056 7mp3-a1-m1-cB_7mp3-a1-m1-cA
65 3kiz-a1-m1-cB 361 31 0.1122 0.0305 0.3548 5.7 3kiz-a1-m1-cA_3kiz-a1-m1-cB
66 3kiz-a1-m1-cA 357 31 0.1122 0.0308 0.3548 5.7 3kiz-a1-m1-cA_3kiz-a1-m1-cB
67 7eij-a1-m1-cB 586 51 0.1633 0.0273 0.3137 6.1 7eij-a1-m1-cA_7eij-a1-m1-cB
68 7eij-a1-m1-cA 586 51 0.1633 0.0273 0.3137 6.1 7eij-a1-m1-cA_7eij-a1-m1-cB
69 5b3d-a6-m1-cD 107 60 0.1531 0.1402 0.2500 9.3 5b3d-a6-m1-cD_5b3d-a6-m1-cC

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Reference:
Jacob Schwartz et al.

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