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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=95)
GTFLHVVEFDDGIDAGFFRTVDEYVARKRECDGLLLYHFGENVAARSQGYTHATSSAFVD
AAAHDAYQVCPAHVAKAFGPRIKRVVVYDGEVPAI

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 2qyc-a2-m2-cB 95 95 1.0000 1.0000 1.0000 5.44e-66 2qyc-a2-m1-cA_2qyc-a2-m2-cB, 2qyc-a2-m1-cB_2qyc-a2-m2-cB, 2qyc-a2-m2-cA_2qyc-a2-m2-cB
2 2qyc-a2-m2-cA 95 95 1.0000 1.0000 1.0000 5.44e-66 2qyc-a2-m2-cA_2qyc-a2-m2-cB
3 2qyc-a2-m1-cB 95 95 1.0000 1.0000 1.0000 5.44e-66 2qyc-a2-m1-cB_2qyc-a2-m2-cB
4 2qyc-a2-m1-cA 95 95 1.0000 1.0000 1.0000 5.44e-66 2qyc-a2-m1-cA_2qyc-a2-m2-cB
5 2q3p-a1-m2-cA 102 57 0.2211 0.2059 0.3684 0.019 2q3p-a1-m1-cA_2q3p-a1-m2-cA
6 2q3p-a1-m1-cA 102 57 0.2211 0.2059 0.3684 0.019 2q3p-a1-m1-cA_2q3p-a1-m2-cA
7 1rjj-a1-m1-cB 111 71 0.2211 0.1892 0.2958 0.031 1rjj-a1-m1-cA_1rjj-a1-m1-cB
8 1rjj-a1-m1-cA 111 71 0.2211 0.1892 0.2958 0.031 1rjj-a1-m1-cA_1rjj-a1-m1-cB
9 3bb5-a1-m1-cB 97 46 0.1789 0.1753 0.3696 1.1 3bb5-a1-m1-cA_3bb5-a1-m1-cB
10 3bb5-a1-m1-cA 97 46 0.1789 0.1753 0.3696 1.1 3bb5-a1-m1-cA_3bb5-a1-m1-cB
11 3bni-a1-m1-cB 171 43 0.2000 0.1111 0.4419 1.7 3bni-a1-m1-cB_3bni-a1-m1-cA
12 1tr0-a2-m1-cY 106 53 0.1684 0.1509 0.3019 5.0 1tr0-a2-m1-cM_1tr0-a2-m1-cY, 1tr0-a2-m1-cW_1tr0-a2-m1-cY, 1tr0-a2-m1-cX_1tr0-a2-m1-cY
13 1tr0-a2-m1-cX 106 53 0.1684 0.1509 0.3019 5.0 1tr0-a2-m1-cX_1tr0-a2-m1-cY
14 1tr0-a2-m1-cW 106 53 0.1684 0.1509 0.3019 5.0 1tr0-a2-m1-cW_1tr0-a2-m1-cY
15 1tr0-a2-m1-cM 106 53 0.1684 0.1509 0.3019 5.0 1tr0-a2-m1-cM_1tr0-a2-m1-cY
16 4ymu-a1-m1-cD 215 20 0.1158 0.0512 0.5500 6.4 4ymu-a1-m1-cC_4ymu-a1-m1-cD
17 4ymu-a1-m1-cC 214 20 0.1158 0.0514 0.5500 6.4 4ymu-a1-m1-cC_4ymu-a1-m1-cD
18 3vzi-a3-m2-cB 213 35 0.1579 0.0704 0.4286 9.8 3vzi-a3-m2-cB_3vzi-a3-m1-cA

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Reference:
Jacob Schwartz et al.

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