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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=90)
GTIITVTAQANEKNTRTVSTAKGDKKIISVPLFEKEKGSNVKVAYGSAFLPDFIQLGDTV
TVSGRVQAKESGEYVNYNFVFPTVEKVFIT

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 2wkc-a1-m1-cC 90 90 1.0000 1.0000 1.0000 1.58e-60 2wkc-a1-m1-cA_2wkc-a1-m1-cC, 2wkc-a1-m1-cB_2wkc-a1-m1-cC
2 2wkc-a1-m1-cA 90 90 1.0000 1.0000 1.0000 1.58e-60 2wkc-a1-m1-cA_2wkc-a1-m1-cC, 2wkc-a1-m1-cB_2wkc-a1-m1-cA
3 2wkc-a1-m1-cB 89 89 0.9889 1.0000 1.0000 6.00e-60 2wkc-a1-m1-cB_2wkc-a1-m1-cA, 2wkc-a1-m1-cB_2wkc-a1-m1-cC
4 2wkd-a1-m2-cA 77 89 0.8556 1.0000 0.8652 6.29e-42 2wkd-a1-m1-cA_2wkd-a1-m2-cA
5 2wkd-a1-m1-cA 77 89 0.8556 1.0000 0.8652 6.29e-42 2wkd-a1-m1-cA_2wkd-a1-m2-cA
6 5nh0-a1-m2-cC 299 44 0.1778 0.0535 0.3636 0.73 5nh0-a1-m1-cC_5nh0-a1-m2-cC, 5nh0-a1-m2-cA_5nh0-a1-m2-cC
7 5nh0-a1-m2-cA 299 44 0.1778 0.0535 0.3636 0.73 5nh0-a1-m2-cA_5nh0-a1-m2-cB, 5nh0-a1-m2-cA_5nh0-a1-m2-cC
8 5nh0-a1-m1-cC 299 44 0.1778 0.0535 0.3636 0.73 5nh0-a1-m1-cC_5nh0-a1-m2-cC
9 5nh0-a1-m1-cA 299 44 0.1778 0.0535 0.3636 0.73 5nh0-a1-m1-cA_5nh0-a1-m2-cB
10 7e6m-a1-m1-cB 299 44 0.1778 0.0535 0.3636 0.74 7e6m-a1-m1-cA_7e6m-a1-m1-cB
11 7e6m-a1-m1-cA 299 44 0.1778 0.0535 0.3636 0.74 7e6m-a1-m1-cA_7e6m-a1-m1-cB
12 5nh0-a1-m2-cB 300 44 0.1778 0.0533 0.3636 0.79 5nh0-a1-m1-cA_5nh0-a1-m2-cB, 5nh0-a1-m2-cA_5nh0-a1-m2-cB
13 3l6i-a3-m2-cB 165 36 0.1444 0.0788 0.3611 3.8 3l6i-a3-m1-cA_3l6i-a3-m2-cB
14 3l6i-a3-m1-cA 164 36 0.1444 0.0793 0.3611 3.9 3l6i-a3-m1-cA_3l6i-a3-m2-cB
15 2xhz-a3-m1-cC 173 37 0.1556 0.0809 0.3784 6.9 2xhz-a3-m1-cC_2xhz-a3-m1-cD
16 2xhz-a1-m1-cA 173 37 0.1556 0.0809 0.3784 6.9 2xhz-a1-m1-cA_2xhz-a1-m1-cD
17 2xhz-a3-m1-cD 173 37 0.1556 0.0809 0.3784 7.1 2xhz-a3-m1-cC_2xhz-a3-m1-cD
18 2xhz-a1-m1-cD 173 37 0.1556 0.0809 0.3784 7.1 2xhz-a1-m1-cA_2xhz-a1-m1-cD, 2xhz-a1-m1-cD_2xhz-a1-m1-cB
19 2xhz-a1-m1-cB 174 37 0.1556 0.0805 0.3784 7.3 2xhz-a1-m1-cD_2xhz-a1-m1-cB
20 6to4-a1-m1-cA 291 24 0.1333 0.0412 0.5000 8.2 6to4-a1-m1-cD_6to4-a1-m1-cA
21 3w9j-a2-m1-cE 1030 33 0.1444 0.0126 0.3939 9.5 3w9j-a2-m1-cD_3w9j-a2-m1-cE
22 3w9j-a2-m1-cD 1019 33 0.1444 0.0128 0.3939 9.8 3w9j-a2-m1-cD_3w9j-a2-m1-cE

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Reference:
Jacob Schwartz et al.

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