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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=89)
GTRTKLKLFVIGNSAISKRAIINLQSICSDPKLADLCDIEVVDLCKNKGIAEQEKILATP
ILIKKEPLPERRIIGDLSDKQKVISALED

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 4kun-a1-m1-cA 89 89 1.0000 1.0000 1.0000 2.96e-58 4kun-a1-m1-cB_4kun-a1-m1-cA
2 4kun-a1-m1-cB 88 88 0.9888 1.0000 1.0000 2.47e-57 4kun-a1-m1-cB_4kun-a1-m1-cA
3 4kso-a1-m1-cD 102 83 0.4494 0.3922 0.4819 2.53e-18 4kso-a1-m1-cA_4kso-a1-m1-cD, 4kso-a1-m1-cC_4kso-a1-m1-cD
4 4kso-a1-m1-cC 102 83 0.4494 0.3922 0.4819 2.53e-18 4kso-a1-m1-cA_4kso-a1-m1-cC, 4kso-a1-m1-cC_4kso-a1-m1-cD
5 4kso-a1-m1-cA 95 83 0.4494 0.4211 0.4819 2.71e-18 4kso-a1-m1-cA_4kso-a1-m1-cC, 4kso-a1-m1-cA_4kso-a1-m1-cD
6 5jwq-a1-m3-cB 88 83 0.4270 0.4318 0.4578 2.22e-17 5jwq-a1-m3-cB_5jwq-a1-m3-cD
7 5jwq-a1-m3-cD 89 83 0.4270 0.4270 0.4578 2.45e-17 5jwq-a1-m3-cB_5jwq-a1-m3-cD
8 1wwj-a1-m1-cD 98 83 0.4270 0.3878 0.4578 2.12e-16 1wwj-a1-m1-cC_1wwj-a1-m1-cD, 1wwj-a1-m1-cD_1wwj-a1-m1-cA
9 1wwj-a1-m1-cC 98 83 0.4270 0.3878 0.4578 2.12e-16 1wwj-a1-m1-cC_1wwj-a1-m1-cA, 1wwj-a1-m1-cC_1wwj-a1-m1-cD
10 1wwj-a1-m1-cA 99 83 0.4270 0.3838 0.4578 2.25e-16 1wwj-a1-m1-cC_1wwj-a1-m1-cA, 1wwj-a1-m1-cD_1wwj-a1-m1-cA
11 1r5p-a2-m2-cA 90 83 0.4157 0.4111 0.4458 2.66e-16 1r5p-a2-m1-cA_1r5p-a2-m2-cA, 1r5p-a2-m2-cA_1r5p-a2-m2-cB
12 1r5p-a2-m1-cA 90 83 0.4157 0.4111 0.4458 2.66e-16 1r5p-a2-m1-cA_1r5p-a2-m2-cA
13 1r5p-a2-m2-cB 93 83 0.4157 0.3978 0.4458 2.74e-16 1r5p-a2-m2-cA_1r5p-a2-m2-cB
14 1vgl-a1-m1-cA 96 83 0.4270 0.3958 0.4578 4.67e-16 1vgl-a1-m1-cA_1vgl-a1-m2-cB
15 1vgl-a1-m2-cB 105 83 0.4270 0.3619 0.4578 6.88e-16 1vgl-a1-m1-cA_1vgl-a1-m2-cB
16 4e0b-a2-m1-cC 300 43 0.1573 0.0467 0.3256 0.69 4e0b-a2-m1-cC_4e0b-a2-m1-cD
17 4e0b-a2-m1-cD 303 43 0.1573 0.0462 0.3256 0.74 4e0b-a2-m1-cC_4e0b-a2-m1-cD
18 6gef-a1-m1-cE 385 40 0.1910 0.0442 0.4250 1.4 6gef-a1-m1-cE_6gef-a1-m1-cF
19 6gef-a1-m1-cF 386 40 0.1910 0.0440 0.4250 1.4 6gef-a1-m1-cE_6gef-a1-m1-cF, 6gef-a1-m1-cF_6gef-a1-m1-cA
20 6gef-a1-m1-cA 388 40 0.1910 0.0438 0.4250 1.4 6gef-a1-m1-cF_6gef-a1-m1-cA
21 4pzf-a6-m1-cD 497 50 0.1685 0.0302 0.3000 2.2 4pzf-a6-m1-cD_4pzf-a6-m1-cB
22 4pzf-a6-m1-cB 498 50 0.1685 0.0301 0.3000 2.3 4pzf-a6-m1-cD_4pzf-a6-m1-cB
23 8hgh-a1-m1-cB 1462 42 0.1685 0.0103 0.3571 3.9 8hgh-a1-m1-cA_8hgh-a1-m1-cB
24 8hgh-a1-m1-cA 1462 42 0.1685 0.0103 0.3571 3.9 8hgh-a1-m1-cA_8hgh-a1-m1-cB
25 8hgg-a1-m1-cD 1484 42 0.1685 0.0101 0.3571 3.9 8hgg-a1-m1-cC_8hgg-a1-m1-cD
26 8hgg-a1-m1-cC 1484 42 0.1685 0.0101 0.3571 3.9 8hgg-a1-m1-cC_8hgg-a1-m1-cD

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Reference:
Jacob Schwartz et al.

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