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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=88)
GVLMDEGAVLTLAADLSSATLDISKQWSNVFNILRENDFEPKFLCEVKLAFKCDGEIKTF
SDLQSLRKFASQKSSMKELLKDVLPQKE

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 2lr6-a1-m1-cB 88 88 1.0000 1.0000 1.0000 1.21e-59 2lr6-a1-m1-cA_2lr6-a1-m1-cB
2 2lr6-a1-m1-cA 88 88 1.0000 1.0000 1.0000 1.21e-59 2lr6-a1-m1-cA_2lr6-a1-m1-cB
3 3soo-a2-m1-cC 74 84 0.8068 0.9595 0.8452 1.07e-32 3soo-a2-m1-cC_3soo-a2-m1-cB
4 3soo-a2-m1-cB 75 84 0.8068 0.9467 0.8452 1.27e-32 3soo-a2-m1-cC_3soo-a2-m1-cB
5 2ykp-a1-m1-cA 203 84 0.3977 0.1724 0.4167 1.83e-18 2ykp-a1-m1-cB_2ykp-a1-m1-cA
6 2ykp-a1-m1-cB 200 84 0.3977 0.1750 0.4167 2.14e-18 2ykp-a1-m1-cB_2ykp-a1-m1-cA
7 2ykq-a1-m1-cB 194 84 0.3977 0.1804 0.4167 4.85e-17 2ykq-a1-m1-cB_2ykq-a1-m1-cC
8 2ykq-a1-m1-cC 196 84 0.3977 0.1786 0.4167 6.02e-17 2ykq-a1-m1-cB_2ykq-a1-m1-cC
9 7u58-a1-m1-cB 641 69 0.2386 0.0328 0.3043 0.34 7u58-a1-m1-cB_7u58-a1-m1-cA
10 7u58-a1-m1-cA 651 69 0.2386 0.0323 0.3043 0.34 7u58-a1-m1-cB_7u58-a1-m1-cA
11 3pfm-a1-m2-cA 238 37 0.1705 0.0630 0.4054 0.92 3pfm-a1-m1-cA_3pfm-a1-m2-cA
12 3pfm-a1-m1-cA 238 37 0.1705 0.0630 0.4054 0.92 3pfm-a1-m1-cA_3pfm-a1-m2-cA
13 3veb-a1-m1-cA 146 32 0.1477 0.0890 0.4062 1.5 3veb-a1-m1-cA_3veb-a1-m2-cB
14 3vea-a1-m2-cB 149 32 0.1477 0.0872 0.4062 1.6 3vea-a1-m1-cB_3vea-a1-m2-cB, 3vea-a1-m2-cA_3vea-a1-m2-cB
15 3vea-a1-m2-cA 149 32 0.1477 0.0872 0.4062 1.6 3vea-a1-m2-cA_3vea-a1-m2-cB
16 3vea-a1-m1-cB 149 32 0.1477 0.0872 0.4062 1.6 3vea-a1-m1-cB_3vea-a1-m2-cB
17 3veb-a1-m2-cB 150 32 0.1477 0.0867 0.4062 1.6 3veb-a1-m1-cA_3veb-a1-m2-cB
18 6o6o-a1-m1-cB 184 32 0.1250 0.0598 0.3438 2.5 6o6o-a1-m1-cB_6o6o-a1-m1-cA
19 3r87-a1-m4-cA 132 48 0.1250 0.0833 0.2292 4.0 3r87-a1-m1-cA_3r87-a1-m4-cA, 3r87-a1-m2-cA_3r87-a1-m4-cA, 3r87-a1-m3-cA_3r87-a1-m4-cA
20 3r87-a1-m3-cA 132 48 0.1250 0.0833 0.2292 4.0 3r87-a1-m3-cA_3r87-a1-m4-cA
21 3r87-a1-m2-cA 132 48 0.1250 0.0833 0.2292 4.0 3r87-a1-m2-cA_3r87-a1-m4-cA
22 3r87-a1-m1-cA 132 48 0.1250 0.0833 0.2292 4.0 3r87-a1-m1-cA_3r87-a1-m4-cA
23 2w8p-a3-m2-cA 485 36 0.1705 0.0309 0.4167 4.8 2w8p-a3-m1-cA_2w8p-a3-m2-cA
24 2w8p-a3-m1-cA 485 36 0.1705 0.0309 0.4167 4.8 2w8p-a3-m1-cA_2w8p-a3-m2-cA
25 2w8p-a2-m2-cA 485 36 0.1705 0.0309 0.4167 4.8 2w8p-a2-m13-cA_2w8p-a2-m2-cA, 2w8p-a2-m14-cA_2w8p-a2-m2-cA
26 2w8p-a2-m14-cA 485 36 0.1705 0.0309 0.4167 4.8 2w8p-a2-m14-cA_2w8p-a2-m2-cA
27 2w8p-a2-m13-cA 485 36 0.1705 0.0309 0.4167 4.8 2w8p-a2-m13-cA_2w8p-a2-m2-cA
28 2w8p-a1-m9-cA 485 36 0.1705 0.0309 0.4167 4.8 2w8p-a1-m7-cA_2w8p-a1-m9-cA
29 2w8p-a1-m7-cA 485 36 0.1705 0.0309 0.4167 4.8 2w8p-a1-m7-cA_2w8p-a1-m9-cA
30 6dq4-a2-m2-cA 312 31 0.1023 0.0288 0.2903 9.4 6dq4-a2-m1-cA_6dq4-a2-m2-cA
31 6dq4-a2-m1-cA 312 31 0.1023 0.0288 0.2903 9.4 6dq4-a2-m1-cA_6dq4-a2-m2-cA
32 3wmt-a1-m1-cB 498 30 0.1477 0.0261 0.4333 9.6 3wmt-a1-m1-cB_3wmt-a1-m1-cA
33 3wmt-a1-m1-cA 503 30 0.1477 0.0258 0.4333 9.6 3wmt-a1-m1-cB_3wmt-a1-m1-cA

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Reference:
Jacob Schwartz et al.

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