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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=95)
GWSNFKFLFLSPGGELYGVLNDKIYKGTPPTHDNDNWLGRAKKIGDGGWNQFQFLFFDPN
GYLYAVSKDKLYKAPPPQSDTDNWIARATEIGSGG

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3kih-a1-m1-cB 95 95 1.0000 1.0000 1.0000 3.21e-66 3kih-a1-m1-cC_3kih-a1-m1-cB, 3kih-a1-m1-cE_3kih-a1-m1-cB
2 3kih-a1-m1-cD 91 91 0.9579 1.0000 1.0000 1.53e-63 3kih-a1-m1-cE_3kih-a1-m1-cD
3 3kih-a1-m1-cD 91 48 0.2842 0.2967 0.5625 1.53e-13 3kih-a1-m1-cE_3kih-a1-m1-cD
4 3kih-a1-m1-cC 91 93 0.9579 1.0000 0.9785 2.29e-61 3kih-a1-m1-cA_3kih-a1-m1-cC, 3kih-a1-m1-cC_3kih-a1-m1-cB, 3kih-a1-m1-cE_3kih-a1-m1-cC
5 3kih-a1-m1-cC 91 48 0.2737 0.2857 0.5417 7.41e-11 3kih-a1-m1-cA_3kih-a1-m1-cC, 3kih-a1-m1-cC_3kih-a1-m1-cB, 3kih-a1-m1-cE_3kih-a1-m1-cC
6 3kih-a1-m1-cE 90 92 0.9474 1.0000 0.9783 9.46e-61 3kih-a1-m1-cE_3kih-a1-m1-cB, 3kih-a1-m1-cE_3kih-a1-m1-cC, 3kih-a1-m1-cE_3kih-a1-m1-cD
7 3kih-a1-m1-cE 90 48 0.2737 0.2889 0.5417 6.79e-11 3kih-a1-m1-cE_3kih-a1-m1-cB, 3kih-a1-m1-cE_3kih-a1-m1-cC, 3kih-a1-m1-cE_3kih-a1-m1-cD
8 3kih-a1-m1-cA 90 92 0.9474 1.0000 0.9783 9.46e-61 3kih-a1-m1-cA_3kih-a1-m1-cC
9 3kih-a1-m1-cA 90 48 0.2737 0.2889 0.5417 6.79e-11 3kih-a1-m1-cA_3kih-a1-m1-cC
10 3kif-a3-m1-cI 94 63 0.5895 0.5957 0.8889 1.24e-36 3kif-a3-m1-cH_3kif-a3-m1-cI
11 3kif-a3-m1-cI 94 79 0.5053 0.5106 0.6076 4.79e-31 3kif-a3-m1-cH_3kif-a3-m1-cI
12 3kif-a1-m1-cA 93 63 0.5895 0.6022 0.8889 1.40e-36 3kif-a1-m1-cG_3kif-a1-m1-cA
13 3kif-a1-m1-cA 93 77 0.4947 0.5054 0.6104 1.29e-30 3kif-a1-m1-cG_3kif-a1-m1-cA
14 3kif-a3-m1-cF 92 62 0.5789 0.5978 0.8871 8.23e-36 3kif-a3-m1-cG_3kif-a3-m1-cF, 3kif-a3-m1-cH_3kif-a3-m1-cF
15 3kif-a3-m1-cF 92 77 0.4947 0.5109 0.6104 1.19e-30 3kif-a3-m1-cG_3kif-a3-m1-cF, 3kif-a3-m1-cH_3kif-a3-m1-cF
16 3kif-a3-m1-cJ 93 60 0.5684 0.5806 0.9000 6.09e-35 3kif-a3-m1-cG_3kif-a3-m1-cJ, 3kif-a3-m1-cH_3kif-a3-m1-cJ
17 3kif-a3-m1-cJ 93 80 0.5053 0.5161 0.6000 3.14e-31 3kif-a3-m1-cG_3kif-a3-m1-cJ, 3kif-a3-m1-cH_3kif-a3-m1-cJ
18 3kif-a3-m1-cG 88 59 0.5579 0.6023 0.8983 4.28e-34 3kif-a3-m1-cG_3kif-a3-m1-cF, 3kif-a3-m1-cG_3kif-a3-m1-cJ
19 3kif-a3-m1-cG 88 77 0.4947 0.5341 0.6104 1.21e-30 3kif-a3-m1-cG_3kif-a3-m1-cF, 3kif-a3-m1-cG_3kif-a3-m1-cJ
20 3kif-a1-m1-cG 88 59 0.5579 0.6023 0.8983 4.28e-34 3kif-a1-m1-cG_3kif-a1-m1-cA
21 3kif-a1-m1-cG 88 77 0.4947 0.5341 0.6104 1.21e-30 3kif-a1-m1-cG_3kif-a1-m1-cA
22 3kif-a3-m1-cH 85 79 0.5053 0.5647 0.6076 3.25e-31 3kif-a3-m1-cH_3kif-a3-m1-cF, 3kif-a3-m1-cH_3kif-a3-m1-cI, 3kif-a3-m1-cH_3kif-a3-m1-cJ
23 3kif-a3-m1-cH 85 54 0.5158 0.5765 0.9074 2.69e-30 3kif-a3-m1-cH_3kif-a3-m1-cF, 3kif-a3-m1-cH_3kif-a3-m1-cI, 3kif-a3-m1-cH_3kif-a3-m1-cJ
24 6rsh-a1-m1-cB 279 32 0.1053 0.0358 0.3125 0.37 6rsh-a1-m1-cB_6rsh-a1-m1-cA
25 6rsh-a1-m1-cA 284 32 0.1053 0.0352 0.3125 0.42 6rsh-a1-m1-cB_6rsh-a1-m1-cA
26 6aah-a1-m1-cA 283 32 0.1053 0.0353 0.3125 0.43 6aah-a1-m1-cA_6aah-a1-m1-cB
27 6aah-a1-m1-cB 284 32 0.1053 0.0352 0.3125 0.45 6aah-a1-m1-cA_6aah-a1-m1-cB
28 7t6f-a1-m1-cB 1045 41 0.1263 0.0115 0.2927 0.60 7t6f-a1-m1-cA_7t6f-a1-m1-cB
29 7t6f-a1-m1-cA 1045 41 0.1263 0.0115 0.2927 0.60 7t6f-a1-m1-cA_7t6f-a1-m1-cB

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Reference:
Jacob Schwartz et al.

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