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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=66)
GYKVKSTTTACCDSCVCTKSIPPQCRCNDMGETCHSACKQCICALSYPPICRCMDNTGFC
YDSCSK

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 6lh6-a1-m1-cA 71 66 1.0000 0.9296 1.0000 8.98e-43 6lh6-a1-m1-cB_6lh6-a1-m1-cA
2 6lh6-a1-m1-cB 66 66 1.0000 1.0000 1.0000 1.19e-42 6lh6-a1-m1-cB_6lh6-a1-m1-cA
3 1pbi-a1-m2-cB 68 56 0.5606 0.5441 0.6607 2.53e-20 1pbi-a1-m2-cA_1pbi-a1-m2-cB
4 1pbi-a1-m2-cB 68 35 0.2121 0.2059 0.4000 0.48 1pbi-a1-m2-cA_1pbi-a1-m2-cB
5 1pbi-a1-m2-cA 68 56 0.5606 0.5441 0.6607 2.53e-20 1pbi-a1-m1-cA_1pbi-a1-m2-cA, 1pbi-a1-m2-cA_1pbi-a1-m2-cB
6 1pbi-a1-m2-cA 68 35 0.2121 0.2059 0.4000 0.48 1pbi-a1-m1-cA_1pbi-a1-m2-cA, 1pbi-a1-m2-cA_1pbi-a1-m2-cB
7 1pbi-a1-m1-cA 68 56 0.5606 0.5441 0.6607 2.53e-20 1pbi-a1-m1-cA_1pbi-a1-m2-cA
8 1pbi-a1-m1-cA 68 35 0.2121 0.2059 0.4000 0.48 1pbi-a1-m1-cA_1pbi-a1-m2-cA
9 1d6r-a1-m2-cI 58 55 0.5758 0.6552 0.6909 1.42e-18 1d6r-a1-m1-cI_1d6r-a1-m2-cI
10 1d6r-a1-m2-cI 58 28 0.1970 0.2241 0.4643 0.22 1d6r-a1-m1-cI_1d6r-a1-m2-cI
11 1d6r-a1-m1-cI 58 55 0.5758 0.6552 0.6909 1.42e-18 1d6r-a1-m1-cI_1d6r-a1-m2-cI
12 1d6r-a1-m1-cI 58 28 0.1970 0.2241 0.4643 0.22 1d6r-a1-m1-cI_1d6r-a1-m2-cI
13 1h34-a1-m2-cA 57 55 0.5303 0.6140 0.6364 5.49e-16 1h34-a1-m1-cA_1h34-a1-m2-cA
14 1h34-a1-m1-cA 57 55 0.5303 0.6140 0.6364 5.49e-16 1h34-a1-m1-cA_1h34-a1-m2-cA
15 2r33-a1-m1-cB 57 55 0.5000 0.5789 0.6000 5.99e-16 2r33-a1-m1-cA_2r33-a1-m1-cB
16 2r33-a1-m1-cB 57 28 0.2273 0.2632 0.5357 0.012 2r33-a1-m1-cA_2r33-a1-m1-cB
17 1pi2-a1-m6-cA 61 57 0.4545 0.4918 0.5263 4.20e-15 1pi2-a1-m3-cA_1pi2-a1-m6-cA, 1pi2-a1-m4-cA_1pi2-a1-m6-cA, 1pi2-a1-m5-cA_1pi2-a1-m6-cA
18 1pi2-a1-m6-cA 61 28 0.2273 0.2459 0.5357 0.011 1pi2-a1-m3-cA_1pi2-a1-m6-cA, 1pi2-a1-m4-cA_1pi2-a1-m6-cA, 1pi2-a1-m5-cA_1pi2-a1-m6-cA
19 1pi2-a1-m5-cA 61 57 0.4545 0.4918 0.5263 4.20e-15 1pi2-a1-m5-cA_1pi2-a1-m6-cA
20 1pi2-a1-m5-cA 61 28 0.2273 0.2459 0.5357 0.011 1pi2-a1-m5-cA_1pi2-a1-m6-cA
21 1pi2-a1-m4-cA 61 57 0.4545 0.4918 0.5263 4.20e-15 1pi2-a1-m4-cA_1pi2-a1-m6-cA
22 1pi2-a1-m4-cA 61 28 0.2273 0.2459 0.5357 0.011 1pi2-a1-m4-cA_1pi2-a1-m6-cA
23 1pi2-a1-m3-cA 61 57 0.4545 0.4918 0.5263 4.20e-15 1pi2-a1-m3-cA_1pi2-a1-m6-cA
24 1pi2-a1-m3-cA 61 28 0.2273 0.2459 0.5357 0.011 1pi2-a1-m3-cA_1pi2-a1-m6-cA
25 2r33-a1-m1-cA 55 55 0.4848 0.5818 0.5818 3.61e-13 2r33-a1-m1-cA_2r33-a1-m1-cB
26 1tab-a1-m2-cI 36 35 0.2576 0.4722 0.4857 7.29e-05 1tab-a1-m1-cI_1tab-a1-m2-cI
27 1tab-a1-m2-cI 36 35 0.2424 0.4444 0.4571 0.034 1tab-a1-m1-cI_1tab-a1-m2-cI
28 1tab-a1-m1-cI 36 35 0.2576 0.4722 0.4857 7.29e-05 1tab-a1-m1-cI_1tab-a1-m2-cI
29 1tab-a1-m1-cI 36 35 0.2424 0.4444 0.4571 0.034 1tab-a1-m1-cI_1tab-a1-m2-cI
30 4l9m-a1-m2-cA 522 33 0.1818 0.0230 0.3636 3.6 4l9m-a1-m1-cA_4l9m-a1-m2-cA
31 4l9m-a1-m1-cA 522 33 0.1818 0.0230 0.3636 3.6 4l9m-a1-m1-cA_4l9m-a1-m2-cA
32 6nbj-a1-m1-cB 378 33 0.1970 0.0344 0.3939 3.8 6nbj-a1-m1-cA_6nbj-a1-m1-cB
33 6nbj-a1-m1-cA 378 33 0.1970 0.0344 0.3939 3.8 6nbj-a1-m1-cA_6nbj-a1-m1-cB

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Reference:
Jacob Schwartz et al.

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