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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=60)
HDDALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSD

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3a7o-a3-m1-cE 60 60 1.0000 1.0000 1.0000 8.74e-36 3a7o-a3-m1-cF_3a7o-a3-m1-cE
2 3a7o-a3-m1-cF 58 58 0.9667 1.0000 1.0000 1.39e-33 3a7o-a3-m1-cF_3a7o-a3-m1-cE
3 6rgo-a1-m1-cD 35 26 0.2500 0.4286 0.5769 0.003 6rgo-a1-m1-cD_6rgo-a1-m1-cC
4 6rgo-a1-m1-cC 38 26 0.2500 0.3947 0.5769 0.003 6rgo-a1-m1-cD_6rgo-a1-m1-cC
5 1vd6-a1-m2-cA 218 19 0.1667 0.0459 0.5263 3.2 1vd6-a1-m1-cA_1vd6-a1-m2-cA
6 1vd6-a1-m1-cA 218 19 0.1667 0.0459 0.5263 3.2 1vd6-a1-m1-cA_1vd6-a1-m2-cA
7 4xwu-a1-m4-cA 314 58 0.3000 0.0573 0.3103 3.6 4xwu-a1-m2-cA_4xwu-a1-m4-cA
8 4xwu-a1-m2-cA 314 58 0.3000 0.0573 0.3103 3.6 4xwu-a1-m2-cA_4xwu-a1-m4-cA
9 3qh9-a1-m2-cA 66 29 0.2000 0.1818 0.4138 7.5 3qh9-a1-m1-cA_3qh9-a1-m2-cA
10 3qh9-a1-m1-cA 66 29 0.2000 0.1818 0.4138 7.5 3qh9-a1-m1-cA_3qh9-a1-m2-cA
11 3k93-a1-m3-cA 218 29 0.2333 0.0642 0.4828 9.2 3k93-a1-m2-cA_3k93-a1-m3-cA
12 3k93-a1-m2-cA 218 29 0.2333 0.0642 0.4828 9.2 3k93-a1-m2-cA_3k93-a1-m3-cA

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Reference:
Jacob Schwartz et al.

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