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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=63)
HHARATGKTFRSGNSEAVRLPRDLAFGADVELTLIRSGDVLTIYPSKGSIADLVATLNQP
RPD

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 5l6l-a1-m1-cE 63 63 1.0000 1.0000 1.0000 2.09e-41 5l6l-a1-m1-cE_5l6l-a1-m1-cH
2 5k8j-a1-m2-cA 79 63 1.0000 0.7975 1.0000 4.44e-41 5k8j-a1-m1-cA_5k8j-a1-m2-cA
3 5k8j-a1-m1-cA 79 63 1.0000 0.7975 1.0000 4.44e-41 5k8j-a1-m1-cA_5k8j-a1-m2-cA
4 5l6l-a1-m1-cH 80 63 1.0000 0.7875 1.0000 6.86e-41 5l6l-a1-m1-cE_5l6l-a1-m1-cH
5 3zvk-a1-m1-cH 57 51 0.2540 0.2807 0.3137 0.002 3zvk-a1-m1-cE_3zvk-a1-m1-cH
6 3zvk-a1-m1-cE 57 51 0.2540 0.2807 0.3137 0.002 3zvk-a1-m1-cE_3zvk-a1-m1-cH
7 6ifm-a1-m1-cH 68 62 0.3016 0.2794 0.3065 0.095 6ifm-a1-m1-cB_6ifm-a1-m1-cH
8 6ifm-a1-m1-cB 68 62 0.3016 0.2794 0.3065 0.095 6ifm-a1-m1-cB_6ifm-a1-m1-cH
9 3w3s-a1-m2-cA 519 24 0.1905 0.0231 0.5000 8.4 3w3s-a1-m1-cA_3w3s-a1-m2-cA
10 3w3s-a1-m1-cA 519 24 0.1905 0.0231 0.5000 8.4 3w3s-a1-m1-cA_3w3s-a1-m2-cA
11 6k0k-a1-m1-cA 479 32 0.1905 0.0251 0.3750 8.8 6k0k-a1-m1-cB_6k0k-a1-m1-cA
12 6k0k-a1-m1-cB 478 32 0.1905 0.0251 0.3750 9.1 6k0k-a1-m1-cB_6k0k-a1-m1-cA
13 6k0k-a2-m1-cD 392 32 0.1905 0.0306 0.3750 9.3 6k0k-a2-m1-cD_6k0k-a2-m1-cC
14 6k0k-a2-m1-cC 397 32 0.1905 0.0302 0.3750 9.3 6k0k-a2-m1-cD_6k0k-a2-m1-cC

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Reference:
Jacob Schwartz et al.

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