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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=61)
HHHAMDTYKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVT
E

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3mp9-a3-m2-cB 61 61 1.0000 1.0000 1.0000 2.61e-39 3mp9-a3-m1-cA_3mp9-a3-m2-cB
2 3mp9-a3-m1-cA 61 61 1.0000 1.0000 1.0000 2.61e-39 3mp9-a3-m1-cA_3mp9-a3-m2-cB
3 2kwd-a1-m1-cE 56 54 0.8852 0.9643 1.0000 2.31e-33 2kwd-a1-m1-cA_2kwd-a1-m1-cE
4 2kwd-a1-m1-cC 56 54 0.8852 0.9643 1.0000 2.31e-33 2kwd-a1-m1-cA_2kwd-a1-m1-cC
5 2kwd-a1-m1-cA 56 54 0.8852 0.9643 1.0000 2.31e-33 2kwd-a1-m1-cA_2kwd-a1-m1-cC, 2kwd-a1-m1-cA_2kwd-a1-m1-cE
6 3v3x-a2-m1-cD 56 54 0.8525 0.9286 0.9630 1.69e-31 3v3x-a2-m1-cB_3v3x-a2-m1-cD
7 3v3x-a2-m1-cB 56 54 0.8525 0.9286 0.9630 1.69e-31 3v3x-a2-m1-cB_3v3x-a2-m1-cD
8 1q10-a1-m1-cB 56 54 0.8197 0.8929 0.9259 2.76e-30 1q10-a1-m1-cA_1q10-a1-m1-cB
9 1q10-a1-m1-cA 56 54 0.8197 0.8929 0.9259 2.76e-30 1q10-a1-m1-cA_1q10-a1-m1-cB
10 3fil-a1-m1-cB 56 54 0.8197 0.8929 0.9259 9.33e-30 3fil-a1-m1-cA_3fil-a1-m1-cB
11 3fil-a1-m1-cA 55 54 0.8197 0.9091 0.9259 1.34e-29 3fil-a1-m1-cA_3fil-a1-m1-cB
12 1mpe-a1-m1-cD 56 54 0.8033 0.8750 0.9074 2.59e-29 1mpe-a1-m1-cA_1mpe-a1-m1-cD, 1mpe-a1-m1-cB_1mpe-a1-m1-cD, 1mpe-a1-m1-cC_1mpe-a1-m1-cD
13 1mpe-a1-m1-cC 56 54 0.8033 0.8750 0.9074 2.59e-29 1mpe-a1-m1-cC_1mpe-a1-m1-cD
14 1mpe-a1-m1-cB 56 54 0.8033 0.8750 0.9074 2.59e-29 1mpe-a1-m1-cB_1mpe-a1-m1-cD
15 1mpe-a1-m1-cA 56 54 0.8033 0.8750 0.9074 2.59e-29 1mpe-a1-m1-cA_1mpe-a1-m1-cD
16 6nla-a1-m2-cA 56 55 0.7869 0.8571 0.8727 1.30e-26 6nla-a1-m1-cA_6nla-a1-m2-cA
17 6nla-a1-m1-cA 56 55 0.7869 0.8571 0.8727 1.30e-26 6nla-a1-m1-cA_6nla-a1-m2-cA
18 6f5n-a1-m1-cB 56 54 0.7377 0.8036 0.8333 2.43e-26 6f5n-a1-m1-cA_6f5n-a1-m1-cB
19 6f5n-a1-m1-cA 56 54 0.7377 0.8036 0.8333 2.43e-26 6f5n-a1-m1-cA_6f5n-a1-m1-cB
20 6pnu-a3-m3-cD 482 34 0.2131 0.0270 0.3824 0.88 6pnu-a3-m1-cB_6pnu-a3-m3-cD
21 6pnu-a1-m1-cD 482 34 0.2131 0.0270 0.3824 0.88 6pnu-a1-m1-cD_6pnu-a1-m1-cC
22 4jot-a1-m3-cA 249 24 0.2131 0.0522 0.5417 2.7 4jot-a1-m2-cA_4jot-a1-m3-cA
23 4jot-a1-m2-cA 249 24 0.2131 0.0522 0.5417 2.7 4jot-a1-m2-cA_4jot-a1-m3-cA
24 6dft-a3-m1-cJ 316 23 0.1475 0.0285 0.3913 4.0 6dft-a3-m1-cJ_6dft-a3-m1-cL
25 6dft-a3-m1-cL 317 23 0.1475 0.0284 0.3913 4.0 6dft-a3-m1-cJ_6dft-a3-m1-cL
26 6t6q-a1-m1-cBBB 207 42 0.2951 0.0870 0.4286 4.9 6t6q-a1-m1-cBBB_6t6q-a1-m1-cAAA
27 6t69-a1-m2-cA 205 42 0.2951 0.0878 0.4286 5.1 6t69-a1-m1-cA_6t69-a1-m2-cA
28 6t69-a1-m1-cA 205 42 0.2951 0.0878 0.4286 5.1 6t69-a1-m1-cA_6t69-a1-m2-cA
29 6t6q-a1-m1-cAAA 209 42 0.2951 0.0861 0.4286 5.2 6t6q-a1-m1-cBBB_6t6q-a1-m1-cAAA
30 4d94-a2-m2-cA 1274 26 0.1475 0.0071 0.3462 9.0 4d94-a2-m1-cA_4d94-a2-m2-cA
31 4d94-a2-m1-cA 1274 26 0.1475 0.0071 0.3462 9.0 4d94-a2-m1-cA_4d94-a2-m2-cA

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Reference:
Jacob Schwartz et al.

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