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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=88)
HHHHHDLVEKVKELCLELEEENLAKAIERFITLTHGIEKTRGEAFAKASIYGFLEGILTT
LKKYSNEKIETLLNEVKTAREETEALLR

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 2hjm-a4-m1-cC 88 88 1.0000 1.0000 1.0000 4.64e-57 2hjm-a4-m1-cC_2hjm-a4-m1-cA
2 2hjm-a4-m1-cA 89 88 1.0000 0.9888 1.0000 5.82e-57 2hjm-a4-m1-cC_2hjm-a4-m1-cA
3 2hjm-a3-m1-cB 89 88 1.0000 0.9888 1.0000 5.82e-57 2hjm-a3-m1-cA_2hjm-a3-m1-cB
4 2hjm-a3-m1-cA 89 88 1.0000 0.9888 1.0000 5.82e-57 2hjm-a3-m1-cA_2hjm-a3-m1-cB
5 5ltf-a1-m1-cB 199 23 0.1250 0.0553 0.4783 0.95 5ltf-a1-m1-cA_5ltf-a1-m1-cB
6 3oa3-a3-m2-cB 252 60 0.1705 0.0595 0.2500 2.8 3oa3-a3-m2-cB_3oa3-a3-m1-cA
7 3oa3-a3-m1-cA 253 60 0.1705 0.0593 0.2500 2.9 3oa3-a3-m2-cB_3oa3-a3-m1-cA
8 3fmt-a2-m1-cF 157 44 0.1591 0.0892 0.3182 5.3 3fmt-a2-m1-cF_3fmt-a2-m1-cE
9 3fmt-a2-m1-cE 162 44 0.1591 0.0864 0.3182 5.7 3fmt-a2-m1-cF_3fmt-a2-m1-cE
10 2g3n-a1-m1-cF 691 23 0.1136 0.0145 0.4348 5.9 2g3n-a1-m1-cC_2g3n-a1-m1-cF, 2g3n-a1-m1-cE_2g3n-a1-m1-cF
11 2g3n-a1-m1-cE 691 23 0.1136 0.0145 0.4348 5.9 2g3n-a1-m1-cE_2g3n-a1-m1-cF
12 2g3n-a1-m1-cC 691 23 0.1136 0.0145 0.4348 5.9 2g3n-a1-m1-cC_2g3n-a1-m1-cF
13 2g3m-a1-m1-cA 691 23 0.1136 0.0145 0.4348 5.9 2g3m-a1-m1-cA_2g3m-a1-m1-cF
14 2g3m-a1-m1-cF 692 23 0.1136 0.0145 0.4348 5.9 2g3m-a1-m1-cA_2g3m-a1-m1-cF
15 8ffu-a2-m1-cD 352 50 0.1477 0.0369 0.2600 8.7 8ffu-a2-m1-cD_8ffu-a2-m1-cC
16 8ffu-a2-m1-cC 358 50 0.1477 0.0363 0.2600 9.5 8ffu-a2-m1-cD_8ffu-a2-m1-cC

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Reference:
Jacob Schwartz et al.

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