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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=79)
HHHHHSWREQGKPPMLFKRFAFGSYAQTRAFLDALAALSEETGQHPQNINFGTTYVNITL
DAAGEAERAFAARVDALAG

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 4low-a1-m1-cB 79 79 1.0000 1.0000 1.0000 5.76e-55 4low-a1-m1-cB_4low-a1-m1-cA
2 4low-a1-m1-cA 84 81 1.0000 0.9405 0.9753 3.80e-53 4low-a1-m1-cB_4low-a1-m1-cA
3 1usm-a1-m2-cA 77 76 0.2911 0.2987 0.3026 0.011 1usm-a1-m1-cA_1usm-a1-m2-cA
4 1usm-a1-m1-cA 77 76 0.2911 0.2987 0.3026 0.011 1usm-a1-m1-cA_1usm-a1-m2-cA
5 4wil-a1-m2-cB 98 65 0.2405 0.1939 0.2923 0.022 4wil-a1-m1-cB_4wil-a1-m2-cB, 4wil-a1-m2-cB_4wil-a1-m1-cA, 4wil-a1-m2-cB_4wil-a1-m2-cA
6 4wil-a1-m1-cB 98 65 0.2405 0.1939 0.2923 0.022 4wil-a1-m1-cB_4wil-a1-m2-cB
7 4wil-a1-m2-cA 100 65 0.2405 0.1900 0.2923 0.023 4wil-a1-m2-cB_4wil-a1-m2-cA
8 4wil-a1-m1-cA 100 65 0.2405 0.1900 0.2923 0.023 4wil-a1-m2-cB_4wil-a1-m1-cA
9 2v6u-a1-m2-cB 99 57 0.2152 0.1717 0.2982 0.10 2v6u-a1-m2-cB_2v6u-a1-m1-cA, 2v6u-a1-m2-cB_2v6u-a1-m2-cA
10 2v6t-a1-m2-cB 100 57 0.2152 0.1700 0.2982 0.11 2v6t-a1-m1-cB_2v6t-a1-m2-cB
11 2v6t-a1-m1-cB 100 57 0.2152 0.1700 0.2982 0.11 2v6t-a1-m1-cB_2v6t-a1-m2-cB
12 2v6u-a1-m2-cA 103 57 0.2152 0.1650 0.2982 0.12 2v6u-a1-m2-cB_2v6u-a1-m2-cA
13 2v6u-a1-m1-cA 103 57 0.2152 0.1650 0.2982 0.12 2v6u-a1-m2-cB_2v6u-a1-m1-cA
14 2ebb-a1-m2-cA 96 45 0.1646 0.1354 0.2889 0.72 2ebb-a1-m1-cA_2ebb-a1-m2-cA
15 2ebb-a1-m1-cA 96 45 0.1646 0.1354 0.2889 0.72 2ebb-a1-m1-cA_2ebb-a1-m2-cA
16 2x7j-a1-m1-cC 577 64 0.2785 0.0381 0.3438 1.5 2x7j-a1-m1-cC_2x7j-a1-m1-cD
17 2x7j-a1-m1-cD 579 64 0.2785 0.0380 0.3438 1.6 2x7j-a1-m1-cA_2x7j-a1-m1-cD, 2x7j-a1-m1-cB_2x7j-a1-m1-cD, 2x7j-a1-m1-cC_2x7j-a1-m1-cD
18 2x7j-a1-m1-cB 579 64 0.2785 0.0380 0.3438 1.6 2x7j-a1-m1-cB_2x7j-a1-m1-cD
19 2x7j-a1-m1-cA 579 64 0.2785 0.0380 0.3438 1.6 2x7j-a1-m1-cA_2x7j-a1-m1-cD
20 4e8d-a1-m1-cA 590 22 0.1266 0.0169 0.4545 5.2 4e8d-a1-m1-cA_4e8d-a1-m1-cB
21 4e8d-a1-m1-cB 594 22 0.1266 0.0168 0.4545 5.2 4e8d-a1-m1-cA_4e8d-a1-m1-cB
22 5z9s-a1-m1-cB 763 15 0.1392 0.0144 0.7333 9.4 5z9s-a1-m1-cB_5z9s-a1-m1-cA
23 5z9s-a1-m1-cA 765 15 0.1392 0.0144 0.7333 9.4 5z9s-a1-m1-cB_5z9s-a1-m1-cA

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Reference:
Jacob Schwartz et al.

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