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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=84)
HHLPLFKFAIDVQYRSNVRDPRGETIERVLREEKGLPVKKLRLGKSIHLEVEAENKEKAY
EIVKKACEELLVNPVVEEYEVREL

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 1vq3-a1-m1-cD 84 84 1.0000 1.0000 1.0000 3.54e-55 1vq3-a1-m1-cD_1vq3-a1-m1-cA
2 1vq3-a1-m1-cA 86 84 1.0000 0.9767 1.0000 5.28e-55 1vq3-a1-m1-cD_1vq3-a1-m1-cA
3 3d54-a3-m1-cC 82 82 0.9643 0.9878 0.9878 7.57e-53 3d54-a3-m1-cB_3d54-a3-m1-cC
4 3d54-a3-m1-cB 82 82 0.9643 0.9878 0.9878 7.57e-53 3d54-a3-m1-cB_3d54-a3-m1-cC
5 2zw2-a1-m1-cB 85 79 0.3095 0.3059 0.3291 1.04e-08 2zw2-a1-m1-cA_2zw2-a1-m1-cB
6 2zw2-a1-m1-cA 85 79 0.3095 0.3059 0.3291 1.04e-08 2zw2-a1-m1-cA_2zw2-a1-m1-cB
7 1twj-a1-m1-cD 80 75 0.2738 0.2875 0.3067 2.39e-08 1twj-a1-m1-cA_1twj-a1-m1-cD
8 1twj-a1-m1-cA 80 75 0.2738 0.2875 0.3067 2.39e-08 1twj-a1-m1-cA_1twj-a1-m1-cD
9 1t4a-a1-m2-cB 76 74 0.2619 0.2895 0.2973 7.38e-06 1t4a-a1-m1-cB_1t4a-a1-m2-cB, 1t4a-a1-m2-cA_1t4a-a1-m2-cB
10 1t4a-a1-m2-cA 76 74 0.2619 0.2895 0.2973 7.38e-06 1t4a-a1-m1-cA_1t4a-a1-m2-cA, 1t4a-a1-m2-cA_1t4a-a1-m2-cB
11 1t4a-a1-m1-cB 76 74 0.2619 0.2895 0.2973 7.38e-06 1t4a-a1-m1-cB_1t4a-a1-m2-cB
12 1t4a-a1-m1-cA 76 74 0.2619 0.2895 0.2973 7.38e-06 1t4a-a1-m1-cA_1t4a-a1-m2-cA
13 2dgb-a1-m1-cD 81 72 0.2857 0.2963 0.3333 1.58e-05 2dgb-a1-m1-cA_2dgb-a1-m1-cD
14 2dgb-a1-m1-cA 81 72 0.2857 0.2963 0.3333 1.58e-05 2dgb-a1-m1-cA_2dgb-a1-m1-cD
15 2yx5-a1-m4-cA 82 78 0.3095 0.3171 0.3333 6.36e-04 2yx5-a1-m1-cA_2yx5-a1-m4-cA, 2yx5-a1-m2-cA_2yx5-a1-m4-cA, 2yx5-a1-m3-cA_2yx5-a1-m4-cA
16 2yx5-a1-m3-cA 82 78 0.3095 0.3171 0.3333 6.36e-04 2yx5-a1-m3-cA_2yx5-a1-m4-cA
17 2yx5-a1-m2-cA 82 78 0.3095 0.3171 0.3333 6.36e-04 2yx5-a1-m2-cA_2yx5-a1-m4-cA
18 2yx5-a1-m1-cA 82 78 0.3095 0.3171 0.3333 6.36e-04 2yx5-a1-m1-cA_2yx5-a1-m4-cA
19 5m2e-a2-m1-cD 418 48 0.1667 0.0335 0.2917 2.6 5m2e-a2-m1-cC_5m2e-a2-m1-cD
20 5m2e-a2-m1-cC 418 48 0.1667 0.0335 0.2917 2.6 5m2e-a2-m1-cC_5m2e-a2-m1-cD
21 1gtd-a1-m2-cB 79 62 0.2381 0.2532 0.3226 3.3 1gtd-a1-m1-cA_1gtd-a1-m2-cB, 1gtd-a1-m2-cA_1gtd-a1-m2-cB
22 7cyi-a2-m1-cC 375 51 0.1786 0.0400 0.2941 3.5 7cyi-a2-m1-cB_7cyi-a2-m1-cC
23 7cyi-a2-m1-cB 375 51 0.1786 0.0400 0.2941 3.5 7cyi-a2-m1-cB_7cyi-a2-m1-cC
24 1gtd-a1-m2-cA 76 62 0.2381 0.2632 0.3226 3.8 1gtd-a1-m2-cA_1gtd-a1-m2-cB
25 1gtd-a1-m1-cA 76 62 0.2381 0.2632 0.3226 3.8 1gtd-a1-m1-cA_1gtd-a1-m2-cB
26 5t55-a1-m1-cB 229 49 0.1310 0.0480 0.2245 4.4 5t55-a1-m1-cA_5t55-a1-m1-cB
27 5t55-a1-m1-cA 229 49 0.1310 0.0480 0.2245 4.4 5t55-a1-m1-cA_5t55-a1-m1-cB
28 5c3c-a1-m3-cB 235 72 0.2024 0.0723 0.2361 4.8 5c3c-a1-m3-cA_5c3c-a1-m3-cB
29 4o7j-a1-m1-cA 157 40 0.1071 0.0573 0.2250 5.8 4o7j-a1-m1-cA_4o7j-a1-m1-cB
30 4o7j-a1-m1-cB 158 40 0.1071 0.0570 0.2250 5.8 4o7j-a1-m1-cA_4o7j-a1-m1-cB
31 5c3c-a1-m3-cA 231 46 0.1667 0.0606 0.3043 6.1 5c3c-a1-m3-cA_5c3c-a1-m3-cB
32 4rih-a1-m1-cA 368 28 0.1667 0.0380 0.5000 8.3 4rih-a1-m1-cA_4rih-a1-m1-cB
33 4cog-a2-m1-cD 207 29 0.1667 0.0676 0.4828 9.0 4cog-a2-m1-cC_4cog-a2-m1-cD
34 4cog-a2-m1-cC 207 29 0.1667 0.0676 0.4828 9.0 4cog-a2-m1-cC_4cog-a2-m1-cD
35 4rih-a1-m1-cB 374 28 0.1667 0.0374 0.5000 9.2 4rih-a1-m1-cA_4rih-a1-m1-cB

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Reference:
Jacob Schwartz et al.

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