Home Research COVID-19 Services Publications People Teaching Job Opening News Forum
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

HomodimerDB
>protein (length=86)
HHMETPLDLLKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELSE
SERRCEMVFIRGDTVTLISTPSAVEI

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3bw1-a1-m4-cB 86 86 1.0000 1.0000 1.0000 9.46e-60 3bw1-a1-m4-cA_3bw1-a1-m4-cB
2 3bw1-a1-m4-cA 86 86 1.0000 1.0000 1.0000 9.46e-60 3bw1-a1-m4-cA_3bw1-a1-m4-cB
3 4n0a-a1-m2-cB 80 80 0.9302 1.0000 1.0000 8.98e-55 4n0a-a1-m1-cA_4n0a-a1-m2-cB
4 4n0a-a1-m1-cA 80 80 0.9302 1.0000 1.0000 8.98e-55 4n0a-a1-m1-cA_4n0a-a1-m2-cB
5 4n0a-a1-m2-cF 75 79 0.8721 1.0000 0.9494 6.65e-49 4n0a-a1-m2-cE_4n0a-a1-m2-cF
6 4n0a-a1-m2-cE 68 80 0.7907 1.0000 0.8500 4.84e-42 4n0a-a1-m2-cE_4n0a-a1-m2-cF
7 4emg-a2-m1-cN 69 76 0.4302 0.5362 0.4868 5.59e-16 4emg-a2-m1-cK_4emg-a2-m1-cN
8 4emg-a2-m1-cK 69 76 0.4302 0.5362 0.4868 5.59e-16 4emg-a2-m1-cK_4emg-a2-m1-cN
9 1th7-a1-m1-cN 78 76 0.3140 0.3462 0.3553 2.47e-08 1th7-a1-m1-cF_1th7-a1-m1-cN, 1th7-a1-m1-cH_1th7-a1-m1-cN
10 1th7-a1-m1-cH 78 76 0.3140 0.3462 0.3553 2.47e-08 1th7-a1-m1-cH_1th7-a1-m1-cN
11 1th7-a1-m1-cF 78 76 0.3140 0.3462 0.3553 2.47e-08 1th7-a1-m1-cF_1th7-a1-m1-cN
12 3pgg-a1-m3-cA 78 73 0.2209 0.2436 0.2603 9.02e-06 3pgg-a1-m3-cA_3pgg-a1-m3-cB
13 3pgg-a1-m3-cB 80 73 0.2209 0.2375 0.2603 3.20e-05 3pgg-a1-m3-cA_3pgg-a1-m3-cB
14 4xq3-a1-m1-cC 77 76 0.2791 0.3117 0.3158 3.84e-04 4xq3-a1-m1-cB_4xq3-a1-m1-cC
15 4xq3-a1-m1-cB 77 76 0.2791 0.3117 0.3158 3.84e-04 4xq3-a1-m1-cB_4xq3-a1-m1-cC
16 5ddt-a1-m1-cB 232 29 0.1163 0.0431 0.3448 3.1 5ddt-a1-m1-cA_5ddt-a1-m1-cB
17 5ddt-a1-m1-cA 232 29 0.1163 0.0431 0.3448 3.1 5ddt-a1-m1-cA_5ddt-a1-m1-cB
18 1orr-a3-m1-cC 335 45 0.1395 0.0358 0.2667 3.5 1orr-a3-m1-cC_1orr-a3-m1-cA
19 1orr-a1-m1-cC 335 45 0.1395 0.0358 0.2667 3.5 1orr-a1-m1-cC_1orr-a1-m1-cD
20 1orr-a1-m1-cD 336 45 0.1395 0.0357 0.2667 3.5 1orr-a1-m1-cC_1orr-a1-m1-cD
21 1orr-a3-m1-cA 338 45 0.1395 0.0355 0.2667 3.5 1orr-a3-m1-cC_1orr-a3-m1-cA
22 4olp-a2-m3-cC 87 41 0.1860 0.1839 0.3902 8.4 4olp-a2-m3-cD_4olp-a2-m3-cC

[Back]
Reference:
Jacob Schwartz et al.

petefredumich.edu | 1150 W. Medical Center Dr., Ann Arbor, MI 48109-0600