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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=77)
HMAVVYAARCKFGLVQNNRITRAVCDLTNEHTTKDGSWHYVEVDNECKYLAGDNPRDQPG
WAVFVKYCTYYKGVPDA

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 6qpk-a1-m1-cA 77 77 1.0000 1.0000 1.0000 3.33e-55 6qpk-a1-m1-cA_6qpk-a1-m1-cB
2 6qpk-a1-m1-cB 79 78 0.9870 0.9620 0.9744 1.85e-52 6qpk-a1-m1-cA_6qpk-a1-m1-cB
3 1a4e-a1-m1-cD 488 94 0.2727 0.0430 0.2234 5.0 1a4e-a1-m1-cA_1a4e-a1-m1-cD, 1a4e-a1-m1-cB_1a4e-a1-m1-cD, 1a4e-a1-m1-cC_1a4e-a1-m1-cD
4 1a4e-a1-m1-cC 488 94 0.2727 0.0430 0.2234 5.0 1a4e-a1-m1-cC_1a4e-a1-m1-cD
5 1a4e-a1-m1-cB 488 94 0.2727 0.0430 0.2234 5.0 1a4e-a1-m1-cB_1a4e-a1-m1-cD
6 1a4e-a1-m1-cA 488 94 0.2727 0.0430 0.2234 5.0 1a4e-a1-m1-cA_1a4e-a1-m1-cD
7 3s5c-a1-m3-cB 148 41 0.1429 0.0743 0.2683 7.4 3s5c-a1-m2-cB_3s5c-a1-m3-cB
8 3s5c-a1-m2-cB 148 41 0.1429 0.0743 0.2683 7.4 3s5c-a1-m2-cB_3s5c-a1-m3-cB
9 6l0t-a1-m1-cA 206 47 0.1818 0.0680 0.2979 7.7 6l0t-a1-m1-cA_6l0t-a1-m1-cB
10 6l0t-a1-m1-cB 206 47 0.1818 0.0680 0.2979 8.6 6l0t-a1-m1-cA_6l0t-a1-m1-cB
11 6rjr-a1-m1-cA 505 67 0.2078 0.0317 0.2388 9.5 6rjr-a1-m1-cD_6rjr-a1-m1-cA

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Reference:
Jacob Schwartz et al.

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