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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=82)
HMDAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQ
VLEELHKSEDSLLFAEENAAKA

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3u1a-a3-m2-cC 84 82 1.0000 0.9762 1.0000 4.80e-51 3u1a-a3-m1-cA_3u1a-a3-m2-cC, 3u1a-a3-m1-cB_3u1a-a3-m2-cC, 3u1a-a3-m2-cD_3u1a-a3-m2-cC
2 3u1a-a3-m1-cB 84 82 1.0000 0.9762 1.0000 4.80e-51 3u1a-a3-m1-cB_3u1a-a3-m2-cC, 3u1a-a3-m2-cD_3u1a-a3-m1-cB
3 3u1c-a2-m3-cB 101 82 1.0000 0.8119 1.0000 5.53e-51 3u1c-a2-m1-cB_3u1c-a2-m3-cB
4 3u1c-a2-m1-cB 101 82 1.0000 0.8119 1.0000 5.53e-51 3u1c-a2-m1-cB_3u1c-a2-m3-cB
5 3u1a-a3-m1-cA 82 82 1.0000 1.0000 1.0000 6.28e-51 3u1a-a3-m1-cA_3u1a-a3-m2-cC, 3u1a-a3-m2-cD_3u1a-a3-m1-cA
6 3u1a-a3-m2-cD 80 80 0.9756 1.0000 1.0000 1.04e-49 3u1a-a3-m2-cD_3u1a-a3-m1-cA, 3u1a-a3-m2-cD_3u1a-a3-m1-cB, 3u1a-a3-m2-cD_3u1a-a3-m2-cC
7 3u59-a2-m2-cC 101 82 0.5732 0.4653 0.5732 4.23e-21 3u59-a2-m1-cC_3u59-a2-m2-cC
8 3u59-a2-m1-cC 101 82 0.5732 0.4653 0.5732 4.23e-21 3u59-a2-m1-cC_3u59-a2-m2-cC
9 5kht-a2-m1-cD 47 48 0.3902 0.6809 0.6667 1.08e-12 5kht-a2-m1-cB_5kht-a2-m1-cD
10 5kht-a2-m1-cB 47 48 0.3902 0.6809 0.6667 1.08e-12 5kht-a2-m1-cB_5kht-a2-m1-cD
11 2z5i-a6-m2-cJ 36 26 0.3049 0.6944 0.9615 8.99e-10 2z5i-a6-m2-cI_2z5i-a6-m2-cJ
12 2z5i-a6-m2-cI 36 26 0.3049 0.6944 0.9615 8.99e-10 2z5i-a6-m2-cI_2z5i-a6-m2-cJ
13 3mtu-a2-m1-cA 72 28 0.3049 0.3472 0.8929 5.12e-07 3mtu-a2-m1-cB_3mtu-a2-m1-cA
14 3mtu-a2-m1-cB 65 28 0.3049 0.3846 0.8929 5.17e-07 3mtu-a2-m1-cB_3mtu-a2-m1-cA, 3mtu-a2-m1-cD_3mtu-a2-m1-cB
15 3mtu-a2-m1-cD 64 28 0.3049 0.3906 0.8929 5.58e-07 3mtu-a2-m1-cD_3mtu-a2-m1-cB
16 6ut2-a1-m1-cC 33 14 0.1707 0.4242 1.0000 0.023 6ut2-a1-m1-cB_6ut2-a1-m1-cC
17 6ut2-a1-m1-cB 33 14 0.1707 0.4242 1.0000 0.023 6ut2-a1-m1-cB_6ut2-a1-m1-cC
18 2g9j-a1-m1-cB 33 14 0.1707 0.4242 1.0000 0.023 2g9j-a1-m1-cA_2g9j-a1-m1-cB
19 2g9j-a1-m1-cA 33 14 0.1707 0.4242 1.0000 0.023 2g9j-a1-m1-cA_2g9j-a1-m1-cB
20 1tmz-a1-m1-cB 32 14 0.1707 0.4375 1.0000 0.027 1tmz-a1-m1-cA_1tmz-a1-m1-cB
21 1tmz-a1-m1-cA 32 14 0.1707 0.4375 1.0000 0.027 1tmz-a1-m1-cA_1tmz-a1-m1-cB
22 4j3c-a1-m1-cB 229 79 0.2317 0.0830 0.2405 2.1 4j3c-a1-m1-cA_4j3c-a1-m1-cB
23 4j3c-a1-m1-cA 227 80 0.2317 0.0837 0.2375 3.5 4j3c-a1-m1-cA_4j3c-a1-m1-cB
24 5ofb-a1-m1-cB 541 55 0.2439 0.0370 0.3636 4.6 5ofb-a1-m1-cA_5ofb-a1-m1-cB
25 2zy2-a1-m9-cA 521 53 0.1951 0.0307 0.3019 7.4 2zy2-a1-m11-cA_2zy2-a1-m9-cA, 2zy2-a1-m12-cA_2zy2-a1-m9-cA, 2zy2-a1-m8-cA_2zy2-a1-m9-cA
26 2zy2-a1-m8-cA 521 53 0.1951 0.0307 0.3019 7.4 2zy2-a1-m8-cA_2zy2-a1-m9-cA
27 2zy2-a1-m12-cA 521 53 0.1951 0.0307 0.3019 7.4 2zy2-a1-m12-cA_2zy2-a1-m9-cA
28 2zy2-a1-m11-cA 521 53 0.1951 0.0307 0.3019 7.4 2zy2-a1-m11-cA_2zy2-a1-m9-cA
29 2qi9-a1-m1-cD 240 21 0.1341 0.0458 0.5238 8.2 2qi9-a1-m1-cC_2qi9-a1-m1-cD
30 2qi9-a1-m1-cC 240 21 0.1341 0.0458 0.5238 8.2 2qi9-a1-m1-cC_2qi9-a1-m1-cD
31 6wlg-a1-m1-cA 361 25 0.1463 0.0332 0.4800 8.6 6wlg-a1-m2-cB_6wlg-a1-m1-cA

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Reference:
Jacob Schwartz et al.

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