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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=50)
HMEQQLYAVMDDICKLVDAIPLHELEMLSCAKELLLQRGLRRKLLANAVD

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 5lus-a5-m1-cJ 50 50 1.0000 1.0000 1.0000 1.78e-30 5lus-a5-m1-cI_5lus-a5-m1-cJ
2 5lus-a5-m1-cI 50 50 1.0000 1.0000 1.0000 1.78e-30 5lus-a5-m1-cI_5lus-a5-m1-cJ
3 5lut-a3-m1-cC 51 50 0.7800 0.7647 0.7800 6.30e-21 5lut-a3-m1-cC_5lut-a3-m1-cD
4 5lut-a3-m1-cD 53 50 0.7800 0.7358 0.7800 6.38e-21 5lut-a3-m1-cC_5lut-a3-m1-cD
5 5lup-a4-m1-cG 52 45 0.5000 0.4808 0.5556 1.85e-11 5lup-a4-m1-cG_5lup-a4-m1-cH
6 5lup-a4-m1-cH 52 45 0.5000 0.4808 0.5556 1.93e-11 5lup-a4-m1-cG_5lup-a4-m1-cH
7 3thg-a2-m2-cA 99 40 0.2200 0.1111 0.2750 2.3 3thg-a2-m1-cA_3thg-a2-m2-cA
8 3thg-a2-m1-cA 99 40 0.2200 0.1111 0.2750 2.3 3thg-a2-m1-cA_3thg-a2-m2-cA
9 3wkr-a2-m1-cF 362 30 0.2400 0.0331 0.4000 5.3 3wkr-a2-m1-cF_3wkr-a2-m1-cE
10 3wkr-a2-m1-cE 364 30 0.2400 0.0330 0.4000 5.3 3wkr-a2-m1-cF_3wkr-a2-m1-cE
11 5gq1-a1-m1-cB 198 13 0.1600 0.0404 0.6154 6.4 5gq1-a1-m1-cE_5gq1-a1-m1-cB
12 2gsz-a1-m1-cE 334 36 0.2200 0.0329 0.3056 7.5 2gsz-a1-m1-cD_2gsz-a1-m1-cE
13 2gsz-a1-m1-cD 334 36 0.2200 0.0329 0.3056 7.5 2gsz-a1-m1-cD_2gsz-a1-m1-cE

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Reference:
Jacob Schwartz et al.

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