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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=82)
HMFEKIRKILADIEDSQNEIEMLLKLANLSLGDFIEIKRGSMDMPKGVNEAFFTQLSEEV
ERLKELINALNKIKKGLLVFGS

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 1zke-a4-m2-cB 82 82 1.0000 1.0000 1.0000 1.51e-53 1zke-a4-m2-cB_1zke-a4-m2-cF
2 1zke-a4-m3-cD 83 82 1.0000 0.9880 1.0000 1.70e-53 1zke-a4-m1-cC_1zke-a4-m3-cD
3 1zke-a4-m2-cF 83 82 1.0000 0.9880 1.0000 1.70e-53 1zke-a4-m2-cB_1zke-a4-m2-cF
4 1zke-a4-m1-cC 81 81 0.9878 1.0000 1.0000 3.15e-52 1zke-a4-m1-cC_1zke-a4-m3-cD
5 2dpn-a1-m1-cB 492 33 0.1707 0.0285 0.4242 1.1 2dpn-a1-m1-cA_2dpn-a1-m1-cB
6 2dpn-a1-m1-cA 492 33 0.1707 0.0285 0.4242 1.1 2dpn-a1-m1-cA_2dpn-a1-m1-cB
7 7elb-a1-m1-cC 1937 64 0.2073 0.0088 0.2656 2.0 7elb-a1-m1-cA_7elb-a1-m1-cC
8 7elb-a1-m1-cA 1937 64 0.2073 0.0088 0.2656 2.0 7elb-a1-m1-cA_7elb-a1-m1-cC
9 4da9-a5-m1-cB 214 79 0.2439 0.0935 0.2532 3.4 4da9-a5-m1-cB_4da9-a5-m1-cD
10 4da9-a4-m1-cB 214 79 0.2439 0.0935 0.2532 3.4 4da9-a4-m1-cB_4da9-a4-m1-cC
11 7el9-a1-m1-cD 1731 67 0.2439 0.0116 0.2985 3.6 7el9-a1-m1-cA_7el9-a1-m1-cD
12 7el9-a1-m1-cA 1731 67 0.2439 0.0116 0.2985 3.6 7el9-a1-m1-cA_7el9-a1-m1-cD
13 4pl0-a1-m1-cB 576 22 0.1585 0.0226 0.5909 4.5 4pl0-a1-m1-cA_4pl0-a1-m1-cB
14 4pl0-a1-m1-cA 571 22 0.1585 0.0228 0.5909 4.5 4pl0-a1-m1-cA_4pl0-a1-m1-cB
15 1su1-a1-m1-cD 182 29 0.1220 0.0549 0.3448 8.1 1su1-a1-m1-cD_1su1-a1-m1-cA, 1su1-a1-m1-cD_1su1-a1-m1-cB
16 1su1-a1-m1-cB 184 29 0.1220 0.0543 0.3448 8.3 1su1-a1-m1-cD_1su1-a1-m1-cB
17 1su1-a1-m1-cA 184 29 0.1220 0.0543 0.3448 8.3 1su1-a1-m1-cD_1su1-a1-m1-cA

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Reference:
Jacob Schwartz et al.

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