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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=62)
HMKAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQK
VM

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 5t01-a1-m1-cB 62 62 1.0000 1.0000 1.0000 1.23e-36 5t01-a1-m1-cA_5t01-a1-m1-cB
2 5t01-a1-m1-cA 62 62 1.0000 1.0000 1.0000 1.23e-36 5t01-a1-m1-cA_5t01-a1-m1-cB
3 1jun-a1-m1-cB 43 38 0.6129 0.8837 1.0000 7.13e-20 1jun-a1-m1-cA_1jun-a1-m1-cB
4 1jun-a1-m1-cA 43 38 0.6129 0.8837 1.0000 7.13e-20 1jun-a1-m1-cA_1jun-a1-m1-cB
5 2dgc-a1-m2-cA 49 37 0.3065 0.3878 0.5135 0.003 2dgc-a1-m1-cA_2dgc-a1-m2-cA
6 2dgc-a1-m1-cA 49 37 0.3065 0.3878 0.5135 0.003 2dgc-a1-m1-cA_2dgc-a1-m2-cA
7 6iak-a3-m1-cE 67 52 0.3065 0.2836 0.3654 0.007 6iak-a3-m1-cE_6iak-a3-m1-cF
8 6iak-a3-m1-cF 71 52 0.3065 0.2676 0.3654 0.008 6iak-a3-m1-cE_6iak-a3-m1-cF
9 6iak-a4-m2-cG 37 35 0.2419 0.4054 0.4286 0.13 6iak-a4-m1-cG_6iak-a4-m2-cG
10 6iak-a4-m1-cG 37 35 0.2419 0.4054 0.4286 0.13 6iak-a4-m1-cG_6iak-a4-m2-cG
11 1gd2-a2-m1-cH 64 58 0.3065 0.2969 0.3276 0.36 1gd2-a2-m1-cG_1gd2-a2-m1-cH
12 1gd2-a2-m1-cG 64 58 0.3065 0.2969 0.3276 0.36 1gd2-a2-m1-cG_1gd2-a2-m1-cH
13 5zko-a1-m1-cC 53 35 0.2419 0.2830 0.4286 0.79 5zko-a1-m1-cA_5zko-a1-m1-cC
14 5zko-a1-m1-cA 53 35 0.2419 0.2830 0.4286 0.79 5zko-a1-m1-cA_5zko-a1-m1-cC
15 6iow-a1-m1-cA 339 46 0.2581 0.0472 0.3478 2.6 6iow-a1-m1-cA_6iow-a1-m1-cB
16 6iow-a1-m1-cB 340 46 0.2581 0.0471 0.3478 2.6 6iow-a1-m1-cA_6iow-a1-m1-cB
17 3m9h-a3-m7-cF 43 36 0.2097 0.3023 0.3611 3.3 3m9h-a3-m5-cF_3m9h-a3-m7-cF
18 3m9h-a3-m5-cF 43 36 0.2097 0.3023 0.3611 3.3 3m9h-a3-m5-cF_3m9h-a3-m7-cF
19 7s7b-a1-m1-cB 351 27 0.1774 0.0313 0.4074 3.3 7s7b-a1-m1-cB_7s7b-a1-m1-cF
20 7s7b-a1-m1-cF 352 27 0.1774 0.0312 0.4074 3.3 7s7b-a1-m1-cB_7s7b-a1-m1-cF
21 6coj-a1-m2-cA 295 27 0.1935 0.0407 0.4444 3.4 6coj-a1-m1-cA_6coj-a1-m2-cA
22 6coj-a1-m1-cA 295 27 0.1935 0.0407 0.4444 3.4 6coj-a1-m1-cA_6coj-a1-m2-cA
23 4irq-a5-m1-cA 246 25 0.1935 0.0488 0.4800 3.5 4irq-a5-m1-cD_4irq-a5-m1-cA
24 4irq-a5-m1-cD 243 25 0.1935 0.0494 0.4800 3.9 4irq-a5-m1-cD_4irq-a5-m1-cA
25 6hdz-a1-m1-cA 421 46 0.1935 0.0285 0.2609 6.5 6hdz-a1-m1-cB_6hdz-a1-m1-cA
26 5jk5-a1-m1-cB 391 31 0.1774 0.0281 0.3548 8.7 5jk5-a1-m1-cB_5jk5-a1-m1-cA
27 5jk5-a1-m1-cA 400 31 0.1774 0.0275 0.3548 8.7 5jk5-a1-m1-cB_5jk5-a1-m1-cA
28 5e9a-a2-m1-cF 684 33 0.1613 0.0146 0.3030 8.8 5e9a-a2-m1-cE_5e9a-a2-m1-cF
29 5e9a-a2-m1-cE 684 33 0.1613 0.0146 0.3030 8.8 5e9a-a2-m1-cE_5e9a-a2-m1-cF
30 3m9b-a2-m1-cL 186 36 0.2097 0.0699 0.3611 9.7 3m9b-a2-m1-cI_3m9b-a2-m1-cL, 3m9b-a2-m1-cK_3m9b-a2-m1-cL
31 3m9b-a2-m1-cK 186 36 0.2097 0.0699 0.3611 9.7 3m9b-a2-m1-cK_3m9b-a2-m1-cL
32 3m9b-a2-m1-cI 186 36 0.2097 0.0699 0.3611 9.7 3m9b-a2-m1-cI_3m9b-a2-m1-cL

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Reference:
Jacob Schwartz et al.

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