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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=93)
HMKLSELQSHIKEFDYAPEQSEHYFFKLIEEVGELSESIRKGKSGQPTLDELKGSVAEEL
YDVLYYVCALANIHGVNLEKTRELKEVLNKVKY

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 2q5z-a1-m2-cA 93 93 1.0000 1.0000 1.0000 8.85e-64 2q5z-a1-m2-cA_2q5z-a1-m2-cB
2 2q5z-a1-m2-cB 94 92 0.9892 0.9787 1.0000 7.19e-63 2q5z-a1-m2-cA_2q5z-a1-m2-cB
3 2q9l-a1-m1-cB 90 90 0.9570 0.9889 0.9889 4.00e-60 2q9l-a1-m1-cD_2q9l-a1-m1-cB
4 2q9l-a1-m1-cD 78 78 0.8280 0.9872 0.9872 2.36e-51 2q9l-a1-m1-cD_2q9l-a1-m1-cB
5 1vmg-a2-m4-cA 80 82 0.2903 0.3375 0.3293 3.03e-06 1vmg-a2-m1-cA_1vmg-a2-m4-cA, 1vmg-a2-m2-cA_1vmg-a2-m4-cA, 1vmg-a2-m3-cA_1vmg-a2-m4-cA
6 1vmg-a2-m3-cA 80 82 0.2903 0.3375 0.3293 3.03e-06 1vmg-a2-m3-cA_1vmg-a2-m4-cA
7 1vmg-a2-m2-cA 80 82 0.2903 0.3375 0.3293 3.03e-06 1vmg-a2-m2-cA_1vmg-a2-m4-cA
8 1vmg-a2-m1-cA 80 82 0.2903 0.3375 0.3293 3.03e-06 1vmg-a2-m1-cA_1vmg-a2-m4-cA
9 7mu5-a1-m1-cA 110 78 0.2688 0.2273 0.3205 4.58e-04 7mu5-a1-m1-cG_7mu5-a1-m1-cA
10 7mu5-a2-m1-cH 104 74 0.2581 0.2308 0.3243 5.75e-04 7mu5-a2-m1-cH_7mu5-a2-m1-cB, 7mu5-a2-m1-cH_7mu5-a2-m1-cF
11 7mu5-a2-m1-cB 105 74 0.2581 0.2286 0.3243 6.02e-04 7mu5-a2-m1-cH_7mu5-a2-m1-cB
12 7mu5-a2-m1-cF 106 75 0.2688 0.2358 0.3333 0.003 7mu5-a2-m1-cH_7mu5-a2-m1-cF
13 7mu5-a1-m1-cG 104 75 0.2688 0.2404 0.3333 0.003 7mu5-a1-m1-cG_7mu5-a1-m1-cA
14 2oig-a1-m1-cC 90 66 0.2366 0.2444 0.3333 0.006 2oig-a1-m1-cC_2oig-a1-m1-cD
15 5ie9-a1-m1-cD 92 96 0.3118 0.3152 0.3021 0.009 5ie9-a1-m1-cD_5ie9-a1-m1-cA, 5ie9-a1-m1-cD_5ie9-a1-m1-cB, 5ie9-a1-m1-cD_5ie9-a1-m1-cC
16 2oig-a1-m1-cD 104 66 0.2258 0.2019 0.3182 0.009 2oig-a1-m1-cC_2oig-a1-m1-cD
17 7ody-a1-m1-cA 99 92 0.2796 0.2626 0.2826 0.10 7ody-a1-m1-cD_7ody-a1-m1-cA
18 7ody-a1-m1-cB 94 92 0.2796 0.2766 0.2826 0.11 7ody-a1-m1-cD_7ody-a1-m1-cB
19 2gta-a1-m1-cB 90 83 0.2581 0.2667 0.2892 0.16 2gta-a1-m1-cC_2gta-a1-m1-cB
20 4qgp-a2-m1-cA 106 50 0.1935 0.1698 0.3600 0.20 4qgp-a2-m1-cB_4qgp-a2-m1-cA
21 4qgp-a1-m1-cA 106 50 0.1935 0.1698 0.3600 0.20 4qgp-a1-m2-cB_4qgp-a1-m1-cA
22 4qgp-a2-m1-cB 105 50 0.1935 0.1714 0.3600 0.20 4qgp-a2-m1-cB_4qgp-a2-m1-cA
23 4qgp-a1-m2-cB 105 50 0.1935 0.1714 0.3600 0.20 4qgp-a1-m1-cB_4qgp-a1-m2-cB, 4qgp-a1-m2-cB_4qgp-a1-m1-cA
24 4qgp-a1-m1-cB 105 50 0.1935 0.1714 0.3600 0.20 4qgp-a1-m1-cB_4qgp-a1-m2-cB
25 7ody-a1-m1-cC 100 92 0.2796 0.2600 0.2826 0.23 7ody-a1-m1-cD_7ody-a1-m1-cC
26 5ie9-a1-m1-cB 94 96 0.3011 0.2979 0.2917 0.25 5ie9-a1-m1-cD_5ie9-a1-m1-cB
27 5ie9-a1-m1-cA 94 96 0.3011 0.2979 0.2917 0.25 5ie9-a1-m1-cD_5ie9-a1-m1-cA
28 2gta-a1-m1-cA 92 85 0.2473 0.2500 0.2706 0.26 2gta-a1-m1-cC_2gta-a1-m1-cA
29 5ie9-a1-m1-cC 95 96 0.3011 0.2947 0.2917 0.28 5ie9-a1-m1-cD_5ie9-a1-m1-cC
30 7ody-a1-m1-cD 92 92 0.2688 0.2717 0.2717 0.42 7ody-a1-m1-cD_7ody-a1-m1-cA, 7ody-a1-m1-cD_7ody-a1-m1-cB, 7ody-a1-m1-cD_7ody-a1-m1-cC
31 4cg4-a2-m1-cD 376 36 0.1398 0.0346 0.3611 0.50 4cg4-a2-m1-cC_4cg4-a2-m1-cD
32 4cg4-a2-m1-cC 376 36 0.1398 0.0346 0.3611 0.50 4cg4-a2-m1-cC_4cg4-a2-m1-cD
33 7cdw-a1-m1-cB 662 53 0.2258 0.0317 0.3962 1.8 7cdw-a1-m1-cB_7cdw-a1-m1-cA
34 7cdw-a1-m1-cA 667 53 0.2258 0.0315 0.3962 1.8 7cdw-a1-m1-cB_7cdw-a1-m1-cA
35 4y9d-a1-m2-cA 235 25 0.1290 0.0511 0.4800 7.9 4y9d-a1-m1-cA_4y9d-a1-m2-cA
36 4y9d-a1-m1-cA 235 25 0.1290 0.0511 0.4800 7.9 4y9d-a1-m1-cA_4y9d-a1-m2-cA
37 2ivo-a1-m2-cB 325 72 0.2366 0.0677 0.3056 8.6 2ivo-a1-m2-cA_2ivo-a1-m2-cB
38 2ivo-a1-m2-cA 325 72 0.2366 0.0677 0.3056 8.6 2ivo-a1-m1-cA_2ivo-a1-m2-cA, 2ivo-a1-m2-cA_2ivo-a1-m2-cB
39 2ivo-a1-m1-cA 325 72 0.2366 0.0677 0.3056 8.6 2ivo-a1-m1-cA_2ivo-a1-m2-cA
40 6u5b-a1-m1-cl 285 52 0.1398 0.0456 0.2500 9.0 6u5b-a1-m1-ck_6u5b-a1-m1-cl
41 6u5b-a1-m1-ck 285 52 0.1398 0.0456 0.2500 9.0 6u5b-a1-m1-ck_6u5b-a1-m1-cl
42 2gta-a1-m1-cC 81 85 0.2473 0.2840 0.2706 9.2 2gta-a1-m1-cC_2gta-a1-m1-cA, 2gta-a1-m1-cC_2gta-a1-m1-cB
43 6m5n-a1-m4-cA 259 20 0.1075 0.0386 0.5000 9.5 6m5n-a1-m1-cA_6m5n-a1-m4-cA, 6m5n-a1-m2-cA_6m5n-a1-m4-cA
44 6m5n-a1-m2-cA 259 20 0.1075 0.0386 0.5000 9.5 6m5n-a1-m2-cA_6m5n-a1-m4-cA
45 6m5n-a1-m1-cA 259 20 0.1075 0.0386 0.5000 9.5 6m5n-a1-m1-cA_6m5n-a1-m4-cA

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Reference:
Jacob Schwartz et al.

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