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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=96)
HMLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFEADFINCVTWRRQAENVANFLK
KGSLAGVDGRLQTRNYENQQGQRVFVTEVQAESVQF

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 6bhw-a2-m1-cF 96 96 1.0000 1.0000 1.0000 1.01e-67 6bhw-a2-m1-cF_6bhw-a2-m1-cE
2 6bhx-a1-m1-cC 102 97 1.0000 0.9412 0.9897 6.98e-66 6bhx-a1-m1-cA_6bhx-a1-m1-cC
3 6bhw-a2-m1-cE 99 98 1.0000 0.9697 0.9796 1.05e-65 6bhw-a2-m1-cE_6bhw-a2-m1-cG, 6bhw-a2-m1-cF_6bhw-a2-m1-cE
4 6bhw-a2-m1-cG 101 99 0.9896 0.9406 0.9596 5.01e-64 6bhw-a2-m1-cE_6bhw-a2-m1-cG
5 6bhx-a1-m1-cA 98 97 0.9583 0.9388 0.9485 1.62e-60 6bhx-a1-m1-cA_6bhx-a1-m1-cC
6 5xgt-a1-m1-cA 104 102 0.8125 0.7500 0.7647 3.23e-51 5xgt-a1-m1-cA_5xgt-a1-m1-cB
7 5xgt-a1-m1-cB 105 102 0.8125 0.7429 0.7647 4.25e-51 5xgt-a1-m1-cA_5xgt-a1-m1-cB
8 7d8j-a1-m2-cA 112 102 0.8229 0.7054 0.7745 4.88e-51 7d8j-a1-m1-cA_7d8j-a1-m2-cA, 7d8j-a1-m2-cB_7d8j-a1-m2-cA
9 7d8j-a1-m1-cA 112 102 0.8229 0.7054 0.7745 4.88e-51 7d8j-a1-m1-cA_7d8j-a1-m2-cA, 7d8j-a1-m2-cB_7d8j-a1-m1-cA
10 7d8j-a1-m2-cB 98 102 0.7708 0.7551 0.7255 5.07e-44 7d8j-a1-m2-cB_7d8j-a1-m1-cA, 7d8j-a1-m2-cB_7d8j-a1-m2-cA
11 3vdy-a1-m1-cA 101 103 0.6354 0.6040 0.5922 1.57e-37 3vdy-a1-m2-cB_3vdy-a1-m1-cA
12 3vdy-a1-m2-cB 97 102 0.6146 0.6082 0.5784 1.01e-34 3vdy-a1-m1-cB_3vdy-a1-m2-cB, 3vdy-a1-m2-cB_3vdy-a1-m1-cA
13 3vdy-a1-m1-cB 97 102 0.6146 0.6082 0.5784 1.01e-34 3vdy-a1-m1-cB_3vdy-a1-m2-cB
14 7f5z-a1-m2-cA 117 98 0.4375 0.3590 0.4286 8.87e-22 7f5z-a1-m2-cA_7f5z-a1-m2-cB
15 1x3e-a1-m2-cB 119 100 0.4688 0.3782 0.4500 8.95e-22 1x3e-a1-m2-cA_1x3e-a1-m2-cB
16 7f5z-a1-m2-cB 118 98 0.4375 0.3559 0.4286 9.82e-22 7f5z-a1-m1-cB_7f5z-a1-m2-cB, 7f5z-a1-m2-cA_7f5z-a1-m2-cB
17 7f5z-a1-m1-cB 118 98 0.4375 0.3559 0.4286 9.82e-22 7f5z-a1-m1-cB_7f5z-a1-m2-cB
18 7f5y-a1-m2-cB 120 100 0.4375 0.3500 0.4200 2.29e-21 7f5y-a1-m2-cA_7f5y-a1-m2-cB
19 5odn-a1-m1-cD 106 94 0.3958 0.3585 0.4043 4.14e-21 5odn-a1-m1-cA_5odn-a1-m1-cD
20 7f5y-a1-m2-cA 109 91 0.4375 0.3853 0.4615 1.89e-20 7f5y-a1-m2-cA_7f5y-a1-m2-cB
21 3eiv-a2-m1-cB 111 91 0.4375 0.3784 0.4615 2.73e-20 3eiv-a2-m1-cA_3eiv-a2-m1-cB
22 5odn-a1-m1-cC 102 95 0.3958 0.3725 0.4000 4.05e-20 5odn-a1-m1-cC_5odn-a1-m1-cF
23 1x3e-a1-m2-cA 110 90 0.4375 0.3818 0.4667 4.34e-20 1x3e-a1-m1-cA_1x3e-a1-m2-cA, 1x3e-a1-m2-cA_1x3e-a1-m2-cB
24 1x3e-a1-m1-cA 110 90 0.4375 0.3818 0.4667 4.34e-20 1x3e-a1-m1-cA_1x3e-a1-m2-cA
25 5odn-a1-m1-cH 99 94 0.3958 0.3838 0.4043 5.14e-20 5odn-a1-m1-cA_5odn-a1-m1-cH
26 5odn-a1-m1-cA 99 94 0.3958 0.3838 0.4043 5.14e-20 5odn-a1-m1-cA_5odn-a1-m1-cD, 5odn-a1-m1-cA_5odn-a1-m1-cH
27 5odn-a1-m1-cF 105 99 0.3958 0.3619 0.3838 6.15e-20 5odn-a1-m1-cC_5odn-a1-m1-cF
28 3a5u-a1-m2-cB 112 91 0.4375 0.3750 0.4615 6.20e-20 3a5u-a1-m2-cB_3a5u-a1-m2-cA
29 3tqy-a1-m1-cD 96 89 0.3854 0.3854 0.4157 2.49e-19 3tqy-a1-m1-cD_3tqy-a1-m1-cC
30 3a5u-a1-m2-cA 118 100 0.4583 0.3729 0.4400 2.94e-19 3a5u-a1-m1-cA_3a5u-a1-m2-cA, 3a5u-a1-m2-cB_3a5u-a1-m2-cA
31 3a5u-a1-m1-cA 118 100 0.4583 0.3729 0.4400 2.94e-19 3a5u-a1-m1-cA_3a5u-a1-m2-cA
32 1ue7-a1-m2-cB 98 89 0.4271 0.4184 0.4607 1.91e-18 1ue7-a1-m2-cB_1ue7-a1-m1-cA, 1ue7-a1-m2-cB_1ue7-a1-m2-cA
33 4mz9-a1-m1-cD 114 97 0.3854 0.3246 0.3814 2.24e-18 4mz9-a1-m1-cB_4mz9-a1-m1-cD, 4mz9-a1-m1-cC_4mz9-a1-m1-cD
34 4mz9-a1-m1-cC 114 97 0.3854 0.3246 0.3814 2.24e-18 4mz9-a1-m1-cB_4mz9-a1-m1-cC, 4mz9-a1-m1-cC_4mz9-a1-m1-cD
35 4mz9-a1-m1-cB 114 97 0.3854 0.3246 0.3814 2.24e-18 4mz9-a1-m1-cB_4mz9-a1-m1-cC, 4mz9-a1-m1-cB_4mz9-a1-m1-cD
36 1ue7-a2-m3-cD 95 89 0.4271 0.4316 0.4607 5.08e-18 1ue7-a2-m1-cD_1ue7-a2-m3-cD
37 1ue7-a2-m1-cD 95 89 0.4271 0.4316 0.4607 5.08e-18 1ue7-a2-m1-cD_1ue7-a2-m3-cD
38 1ue7-a1-m2-cA 106 74 0.3958 0.3585 0.5135 5.54e-18 1ue7-a1-m2-cB_1ue7-a1-m2-cA
39 1ue7-a1-m1-cA 106 74 0.3958 0.3585 0.5135 5.54e-18 1ue7-a1-m2-cB_1ue7-a1-m1-cA
40 1ue1-a1-m2-cB 119 86 0.3958 0.3193 0.4419 5.67e-18 1ue1-a1-m1-cB_1ue1-a1-m2-cB
41 1ue1-a1-m1-cB 119 86 0.3958 0.3193 0.4419 5.67e-18 1ue1-a1-m1-cB_1ue1-a1-m2-cB
42 5odn-a1-m1-cE 105 103 0.3958 0.3619 0.3689 5.90e-18 5odn-a1-m1-cG_5odn-a1-m1-cE
43 2vw9-a1-m2-cB 105 104 0.4062 0.3714 0.3750 9.94e-18 2vw9-a1-m1-cB_2vw9-a1-m2-cB
44 2vw9-a1-m1-cB 105 104 0.4062 0.3714 0.3750 9.94e-18 2vw9-a1-m1-cB_2vw9-a1-m2-cB
45 3eiv-a2-m1-cA 98 70 0.3542 0.3469 0.4857 1.24e-17 3eiv-a2-m1-cA_3eiv-a2-m1-cB
46 3eiv-a1-m1-cA 98 70 0.3542 0.3469 0.4857 1.24e-17 3eiv-a1-m1-cA_3eiv-a1-m1-cD
47 1sru-a1-m1-cD 101 88 0.3750 0.3564 0.4091 2.22e-17 1sru-a1-m1-cA_1sru-a1-m1-cD
48 1sru-a1-m1-cA 100 78 0.3438 0.3300 0.4231 4.94e-17 1sru-a1-m1-cA_1sru-a1-m1-cD, 1sru-a1-m1-cC_1sru-a1-m1-cA
49 3tqy-a1-m1-cC 106 99 0.3958 0.3585 0.3838 6.99e-17 3tqy-a1-m1-cD_3tqy-a1-m1-cC
50 3eiv-a3-m1-cD 100 75 0.3854 0.3700 0.4933 7.72e-17 3eiv-a3-m1-cD_3eiv-a3-m1-cC
51 3eiv-a1-m1-cD 100 75 0.3854 0.3700 0.4933 7.72e-17 3eiv-a1-m1-cA_3eiv-a1-m1-cD
52 5odn-a1-m1-cG 102 103 0.3854 0.3627 0.3592 2.80e-16 5odn-a1-m1-cG_5odn-a1-m1-cE
53 3eiv-a3-m1-cC 111 81 0.3854 0.3333 0.4568 1.06e-15 3eiv-a3-m1-cD_3eiv-a3-m1-cC
54 1kaw-a1-m1-cD 96 87 0.3542 0.3542 0.3908 1.79e-15 1kaw-a1-m1-cC_1kaw-a1-m1-cD
55 1kaw-a1-m1-cC 96 87 0.3542 0.3542 0.3908 1.79e-15 1kaw-a1-m1-cA_1kaw-a1-m1-cC, 1kaw-a1-m1-cC_1kaw-a1-m1-cD
56 1kaw-a1-m1-cA 96 87 0.3542 0.3542 0.3908 1.79e-15 1kaw-a1-m1-cA_1kaw-a1-m1-cC
57 7f25-a1-m1-cB 106 92 0.3542 0.3208 0.3696 2.57e-15 7f25-a1-m1-cA_7f25-a1-m1-cB
58 7f25-a1-m1-cA 106 92 0.3542 0.3208 0.3696 2.57e-15 7f25-a1-m1-cA_7f25-a1-m1-cB
59 2fxq-a1-m2-cA 197 89 0.4167 0.2030 0.4494 3.33e-15 2fxq-a1-m1-cA_2fxq-a1-m2-cA
60 2fxq-a1-m2-cA 197 82 0.3438 0.1675 0.4024 1.15e-09 2fxq-a1-m1-cA_2fxq-a1-m2-cA
61 2fxq-a1-m1-cA 197 89 0.4167 0.2030 0.4494 3.33e-15 2fxq-a1-m1-cA_2fxq-a1-m2-cA
62 2fxq-a1-m1-cA 197 82 0.3438 0.1675 0.4024 1.15e-09 2fxq-a1-m1-cA_2fxq-a1-m2-cA
63 5odp-a1-m1-cA 99 103 0.3854 0.3737 0.3592 7.81e-15 5odp-a1-m1-cA_5odp-a1-m1-cG
64 1z9f-a2-m4-cA 89 76 0.3646 0.3933 0.4605 2.54e-14 1z9f-a2-m1-cA_1z9f-a2-m4-cA, 1z9f-a2-m3-cA_1z9f-a2-m4-cA
65 1z9f-a2-m3-cA 89 76 0.3646 0.3933 0.4605 2.54e-14 1z9f-a2-m3-cA_1z9f-a2-m4-cA
66 1z9f-a2-m1-cA 89 76 0.3646 0.3933 0.4605 2.54e-14 1z9f-a2-m1-cA_1z9f-a2-m4-cA
67 5odp-a1-m1-cG 100 103 0.3750 0.3600 0.3495 9.01e-14 5odp-a1-m1-cA_5odp-a1-m1-cG
68 3udg-a2-m1-cB 214 98 0.3750 0.1682 0.3673 9.47e-13 3udg-a2-m1-cB_3udg-a2-m1-cC
69 3udg-a2-m1-cB 214 93 0.3229 0.1449 0.3333 1.64e-06 3udg-a2-m1-cB_3udg-a2-m1-cC
70 1sru-a1-m1-cC 96 88 0.3438 0.3438 0.3750 5.68e-12 1sru-a1-m1-cC_1sru-a1-m1-cA
71 2ihf-a1-m2-cA 205 101 0.3958 0.1854 0.3762 7.95e-12 2ihf-a1-m1-cA_2ihf-a1-m2-cA
72 2ihf-a1-m2-cA 205 69 0.3542 0.1659 0.4928 3.27e-11 2ihf-a1-m1-cA_2ihf-a1-m2-cA
73 2ihf-a1-m1-cA 205 101 0.3958 0.1854 0.3762 7.95e-12 2ihf-a1-m1-cA_2ihf-a1-m2-cA
74 2ihf-a1-m1-cA 205 69 0.3542 0.1659 0.4928 3.27e-11 2ihf-a1-m1-cA_2ihf-a1-m2-cA
75 3udg-a2-m1-cC 214 76 0.3021 0.1355 0.3816 1.06e-11 3udg-a2-m1-cB_3udg-a2-m1-cC
76 3udg-a2-m1-cC 214 100 0.3750 0.1682 0.3600 5.39e-06 3udg-a2-m1-cB_3udg-a2-m1-cC
77 3pgz-a1-m1-cA 109 93 0.3229 0.2844 0.3333 1.31e-11 3pgz-a1-m1-cA_3pgz-a1-m1-cB
78 3pgz-a1-m1-cB 114 98 0.3333 0.2807 0.3265 1.61e-11 3pgz-a1-m1-cA_3pgz-a1-m1-cB
79 1se8-a1-m2-cA 205 97 0.3646 0.1707 0.3608 7.50e-10 1se8-a1-m1-cA_1se8-a1-m2-cA
80 1se8-a1-m2-cA 205 83 0.3021 0.1415 0.3494 1.39e-04 1se8-a1-m1-cA_1se8-a1-m2-cA
81 1se8-a1-m1-cA 205 97 0.3646 0.1707 0.3608 7.50e-10 1se8-a1-m1-cA_1se8-a1-m2-cA
82 1se8-a1-m1-cA 205 83 0.3021 0.1415 0.3494 1.39e-04 1se8-a1-m1-cA_1se8-a1-m2-cA
83 3lgj-a1-m1-cB 97 80 0.3021 0.2990 0.3625 1.65e-09 3lgj-a1-m1-cA_3lgj-a1-m1-cB
84 3lgj-a1-m1-cA 95 77 0.3021 0.3053 0.3766 3.92e-09 3lgj-a1-m1-cA_3lgj-a1-m1-cB
85 3ulp-a1-m1-cC 116 98 0.2917 0.2414 0.2857 1.42e-07 3ulp-a1-m1-cD_3ulp-a1-m1-cC
86 3ulp-a1-m1-cA 114 93 0.2708 0.2281 0.2796 4.75e-07 3ulp-a1-m1-cD_3ulp-a1-m1-cA
87 3ulp-a1-m1-cB 114 93 0.2917 0.2456 0.3011 1.73e-06 3ulp-a1-m1-cD_3ulp-a1-m1-cB
88 3ulp-a1-m1-cD 113 92 0.2812 0.2389 0.2935 1.74e-06 3ulp-a1-m1-cD_3ulp-a1-m1-cA, 3ulp-a1-m1-cD_3ulp-a1-m1-cB, 3ulp-a1-m1-cD_3ulp-a1-m1-cC
89 2dud-a2-m2-cB 92 95 0.3021 0.3152 0.3053 6.25e-06 2dud-a2-m2-cB_2dud-a2-m1-cA, 2dud-a2-m2-cB_2dud-a2-m2-cA
90 2dud-a2-m2-cA 95 101 0.3229 0.3263 0.3069 4.31e-05 2dud-a2-m2-cB_2dud-a2-m2-cA
91 2dud-a2-m1-cA 95 101 0.3229 0.3263 0.3069 4.31e-05 2dud-a2-m2-cB_2dud-a2-m1-cA
92 7dpa-a1-m1-cD 1642 58 0.1771 0.0104 0.2931 0.44 7dpa-a1-m1-cA_7dpa-a1-m1-cD
93 7dpa-a1-m1-cA 1642 58 0.1771 0.0104 0.2931 0.44 7dpa-a1-m1-cA_7dpa-a1-m1-cD
94 2ex2-a1-m2-cA 456 42 0.1562 0.0329 0.3571 3.3 2ex2-a1-m1-cA_2ex2-a1-m2-cA
95 2ex2-a1-m1-cA 456 42 0.1562 0.0329 0.3571 3.3 2ex2-a1-m1-cA_2ex2-a1-m2-cA
96 1zem-a3-m2-cH 260 60 0.1562 0.0577 0.2500 9.9 1zem-a3-m2-cE_1zem-a3-m2-cH, 1zem-a3-m2-cF_1zem-a3-m2-cH
97 1zem-a3-m2-cF 260 60 0.1562 0.0577 0.2500 9.9 1zem-a3-m2-cF_1zem-a3-m2-cH
98 1zem-a3-m2-cE 260 60 0.1562 0.0577 0.2500 9.9 1zem-a3-m2-cE_1zem-a3-m2-cH

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Reference:
Jacob Schwartz et al.

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