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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=99)
HMLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFEREADFINCVTWRRQAENVANF
LKKGSLAGVDGRLQTRNYENQQGQRVFVTEVQAESVQFL

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 6bhw-a2-m1-cE 99 99 1.0000 1.0000 1.0000 7.11e-70 6bhw-a2-m1-cE_6bhw-a2-m1-cG, 6bhw-a2-m1-cF_6bhw-a2-m1-cE
2 6bhx-a1-m1-cC 102 99 0.9899 0.9608 0.9899 3.46e-67 6bhx-a1-m1-cA_6bhx-a1-m1-cC
3 6bhw-a2-m1-cG 101 100 0.9899 0.9703 0.9800 1.69e-66 6bhw-a2-m1-cE_6bhw-a2-m1-cG
4 6bhw-a2-m1-cF 96 98 0.9697 1.0000 0.9796 1.09e-65 6bhw-a2-m1-cF_6bhw-a2-m1-cE
5 6bhx-a1-m1-cA 98 99 0.9394 0.9490 0.9394 5.75e-61 6bhx-a1-m1-cA_6bhx-a1-m1-cC
6 5xgt-a1-m1-cA 104 103 0.8182 0.7788 0.7864 1.27e-53 5xgt-a1-m1-cA_5xgt-a1-m1-cB
7 7d8j-a1-m2-cA 112 103 0.8283 0.7321 0.7961 1.60e-53 7d8j-a1-m1-cA_7d8j-a1-m2-cA, 7d8j-a1-m2-cB_7d8j-a1-m2-cA
8 7d8j-a1-m1-cA 112 103 0.8283 0.7321 0.7961 1.60e-53 7d8j-a1-m1-cA_7d8j-a1-m2-cA, 7d8j-a1-m2-cB_7d8j-a1-m1-cA
9 5xgt-a1-m1-cB 105 103 0.8182 0.7714 0.7864 1.60e-53 5xgt-a1-m1-cA_5xgt-a1-m1-cB
10 7d8j-a1-m2-cB 98 103 0.7778 0.7857 0.7476 1.39e-46 7d8j-a1-m2-cB_7d8j-a1-m1-cA, 7d8j-a1-m2-cB_7d8j-a1-m2-cA
11 3vdy-a1-m1-cA 101 104 0.6263 0.6139 0.5962 1.18e-38 3vdy-a1-m2-cB_3vdy-a1-m1-cA
12 3vdy-a1-m2-cB 97 103 0.6061 0.6186 0.5825 9.78e-36 3vdy-a1-m1-cB_3vdy-a1-m2-cB, 3vdy-a1-m2-cB_3vdy-a1-m1-cA
13 3vdy-a1-m1-cB 97 103 0.6061 0.6186 0.5825 9.78e-36 3vdy-a1-m1-cB_3vdy-a1-m2-cB
14 1x3e-a1-m2-cB 119 100 0.4646 0.3866 0.4600 6.64e-23 1x3e-a1-m2-cA_1x3e-a1-m2-cB
15 7f5y-a1-m2-cB 120 100 0.4444 0.3667 0.4400 2.31e-22 7f5y-a1-m2-cA_7f5y-a1-m2-cB
16 7f5z-a1-m2-cA 117 98 0.4444 0.3761 0.4490 9.19e-22 7f5z-a1-m2-cA_7f5z-a1-m2-cB
17 3eiv-a2-m1-cB 111 91 0.4040 0.3604 0.4396 1.25e-21 3eiv-a2-m1-cA_3eiv-a2-m1-cB
18 7f5z-a1-m2-cB 118 98 0.4343 0.3644 0.4388 1.37e-21 7f5z-a1-m1-cB_7f5z-a1-m2-cB, 7f5z-a1-m2-cA_7f5z-a1-m2-cB
19 7f5z-a1-m1-cB 118 98 0.4343 0.3644 0.4388 1.37e-21 7f5z-a1-m1-cB_7f5z-a1-m2-cB
20 7f5y-a1-m2-cA 109 91 0.4242 0.3853 0.4615 2.23e-21 7f5y-a1-m2-cA_7f5y-a1-m2-cB
21 5odn-a1-m1-cF 105 100 0.4040 0.3810 0.4000 2.34e-21 5odn-a1-m1-cC_5odn-a1-m1-cF
22 5odn-a1-m1-cC 102 97 0.3939 0.3824 0.4021 1.11e-20 5odn-a1-m1-cC_5odn-a1-m1-cF
23 3a5u-a1-m2-cA 118 100 0.4545 0.3814 0.4500 1.88e-20 3a5u-a1-m1-cA_3a5u-a1-m2-cA, 3a5u-a1-m2-cB_3a5u-a1-m2-cA
24 3a5u-a1-m1-cA 118 100 0.4545 0.3814 0.4500 1.88e-20 3a5u-a1-m1-cA_3a5u-a1-m2-cA
25 5odn-a1-m1-cD 106 97 0.3939 0.3679 0.4021 1.89e-20 5odn-a1-m1-cA_5odn-a1-m1-cD
26 1x3e-a1-m2-cA 110 90 0.4343 0.3909 0.4778 2.21e-20 1x3e-a1-m1-cA_1x3e-a1-m2-cA, 1x3e-a1-m2-cA_1x3e-a1-m2-cB
27 1x3e-a1-m1-cA 110 90 0.4343 0.3909 0.4778 2.21e-20 1x3e-a1-m1-cA_1x3e-a1-m2-cA
28 5odn-a1-m1-cH 99 97 0.3939 0.3939 0.4021 2.56e-20 5odn-a1-m1-cA_5odn-a1-m1-cH
29 5odn-a1-m1-cA 99 97 0.3939 0.3939 0.4021 2.56e-20 5odn-a1-m1-cA_5odn-a1-m1-cD, 5odn-a1-m1-cA_5odn-a1-m1-cH
30 3a5u-a1-m2-cB 112 91 0.4242 0.3750 0.4615 1.01e-19 3a5u-a1-m2-cB_3a5u-a1-m2-cA
31 1ue1-a1-m2-cB 119 86 0.4040 0.3361 0.4651 5.61e-19 1ue1-a1-m1-cB_1ue1-a1-m2-cB
32 1ue1-a1-m1-cB 119 86 0.4040 0.3361 0.4651 5.61e-19 1ue1-a1-m1-cB_1ue1-a1-m2-cB
33 1ue7-a2-m3-cD 95 72 0.3838 0.4000 0.5278 6.27e-19 1ue7-a2-m1-cD_1ue7-a2-m3-cD
34 1ue7-a2-m1-cD 95 72 0.3838 0.4000 0.5278 6.27e-19 1ue7-a2-m1-cD_1ue7-a2-m3-cD
35 4mz9-a1-m1-cD 114 97 0.3838 0.3333 0.3918 8.33e-19 4mz9-a1-m1-cB_4mz9-a1-m1-cD, 4mz9-a1-m1-cC_4mz9-a1-m1-cD
36 4mz9-a1-m1-cC 114 97 0.3838 0.3333 0.3918 8.33e-19 4mz9-a1-m1-cB_4mz9-a1-m1-cC, 4mz9-a1-m1-cC_4mz9-a1-m1-cD
37 4mz9-a1-m1-cB 114 97 0.3838 0.3333 0.3918 8.33e-19 4mz9-a1-m1-cB_4mz9-a1-m1-cC, 4mz9-a1-m1-cB_4mz9-a1-m1-cD
38 2vw9-a1-m2-cB 105 105 0.3939 0.3714 0.3714 8.49e-19 2vw9-a1-m1-cB_2vw9-a1-m2-cB
39 2vw9-a1-m1-cB 105 105 0.3939 0.3714 0.3714 8.49e-19 2vw9-a1-m1-cB_2vw9-a1-m2-cB
40 5odn-a1-m1-cE 105 104 0.3939 0.3714 0.3750 1.01e-18 5odn-a1-m1-cG_5odn-a1-m1-cE
41 1ue7-a1-m2-cA 106 74 0.3939 0.3679 0.5270 2.92e-18 1ue7-a1-m2-cB_1ue7-a1-m2-cA
42 1ue7-a1-m1-cA 106 74 0.3939 0.3679 0.5270 2.92e-18 1ue7-a1-m2-cB_1ue7-a1-m1-cA
43 1ue7-a1-m2-cB 98 72 0.3737 0.3776 0.5139 6.90e-18 1ue7-a1-m2-cB_1ue7-a1-m1-cA, 1ue7-a1-m2-cB_1ue7-a1-m2-cA
44 3tqy-a1-m1-cD 96 91 0.3939 0.4062 0.4286 9.70e-18 3tqy-a1-m1-cD_3tqy-a1-m1-cC
45 1sru-a1-m1-cD 101 89 0.3636 0.3564 0.4045 1.74e-17 1sru-a1-m1-cA_1sru-a1-m1-cD
46 3tqy-a1-m1-cC 106 99 0.3737 0.3491 0.3737 3.09e-17 3tqy-a1-m1-cD_3tqy-a1-m1-cC
47 1sru-a1-m1-cA 100 79 0.3333 0.3300 0.4177 3.56e-17 1sru-a1-m1-cA_1sru-a1-m1-cD, 1sru-a1-m1-cC_1sru-a1-m1-cA
48 5odn-a1-m1-cG 102 104 0.3838 0.3725 0.3654 3.83e-17 5odn-a1-m1-cG_5odn-a1-m1-cE
49 3eiv-a3-m1-cC 111 81 0.3838 0.3423 0.4691 5.65e-17 3eiv-a3-m1-cD_3eiv-a3-m1-cC
50 3eiv-a2-m1-cA 98 72 0.3535 0.3571 0.4861 9.93e-17 3eiv-a2-m1-cA_3eiv-a2-m1-cB
51 3eiv-a1-m1-cA 98 72 0.3535 0.3571 0.4861 9.93e-17 3eiv-a1-m1-cA_3eiv-a1-m1-cD
52 2fxq-a1-m2-cA 197 91 0.4242 0.2132 0.4615 1.32e-16 2fxq-a1-m1-cA_2fxq-a1-m2-cA
53 2fxq-a1-m2-cA 197 82 0.3333 0.1675 0.4024 6.53e-11 2fxq-a1-m1-cA_2fxq-a1-m2-cA
54 2fxq-a1-m1-cA 197 91 0.4242 0.2132 0.4615 1.32e-16 2fxq-a1-m1-cA_2fxq-a1-m2-cA
55 2fxq-a1-m1-cA 197 82 0.3333 0.1675 0.4024 6.53e-11 2fxq-a1-m1-cA_2fxq-a1-m2-cA
56 3eiv-a3-m1-cD 100 76 0.3636 0.3600 0.4737 4.63e-16 3eiv-a3-m1-cD_3eiv-a3-m1-cC
57 3eiv-a1-m1-cD 100 76 0.3636 0.3600 0.4737 4.63e-16 3eiv-a1-m1-cA_3eiv-a1-m1-cD
58 7f25-a1-m1-cB 106 97 0.3535 0.3302 0.3608 9.15e-16 7f25-a1-m1-cA_7f25-a1-m1-cB
59 7f25-a1-m1-cA 106 97 0.3535 0.3302 0.3608 9.15e-16 7f25-a1-m1-cA_7f25-a1-m1-cB
60 5odp-a1-m1-cA 99 104 0.3838 0.3838 0.3654 1.15e-15 5odp-a1-m1-cA_5odp-a1-m1-cG
61 5odp-a1-m1-cG 100 104 0.3737 0.3700 0.3558 1.22e-14 5odp-a1-m1-cA_5odp-a1-m1-cG
62 1z9f-a2-m4-cA 89 101 0.4242 0.4719 0.4158 5.96e-14 1z9f-a2-m1-cA_1z9f-a2-m4-cA, 1z9f-a2-m3-cA_1z9f-a2-m4-cA
63 1z9f-a2-m3-cA 89 101 0.4242 0.4719 0.4158 5.96e-14 1z9f-a2-m3-cA_1z9f-a2-m4-cA
64 1z9f-a2-m1-cA 89 101 0.4242 0.4719 0.4158 5.96e-14 1z9f-a2-m1-cA_1z9f-a2-m4-cA
65 1kaw-a1-m1-cD 96 89 0.3434 0.3542 0.3820 8.50e-14 1kaw-a1-m1-cC_1kaw-a1-m1-cD
66 1kaw-a1-m1-cC 96 89 0.3434 0.3542 0.3820 8.50e-14 1kaw-a1-m1-cA_1kaw-a1-m1-cC, 1kaw-a1-m1-cC_1kaw-a1-m1-cD
67 1kaw-a1-m1-cA 96 89 0.3434 0.3542 0.3820 8.50e-14 1kaw-a1-m1-cA_1kaw-a1-m1-cC
68 2ihf-a1-m2-cA 205 104 0.3939 0.1902 0.3750 3.12e-13 2ihf-a1-m1-cA_2ihf-a1-m2-cA
69 2ihf-a1-m2-cA 205 71 0.3535 0.1707 0.4930 1.32e-11 2ihf-a1-m1-cA_2ihf-a1-m2-cA
70 2ihf-a1-m1-cA 205 104 0.3939 0.1902 0.3750 3.12e-13 2ihf-a1-m1-cA_2ihf-a1-m2-cA
71 2ihf-a1-m1-cA 205 71 0.3535 0.1707 0.4930 1.32e-11 2ihf-a1-m1-cA_2ihf-a1-m2-cA
72 3udg-a2-m1-cB 214 98 0.3636 0.1682 0.3673 6.18e-13 3udg-a2-m1-cB_3udg-a2-m1-cC
73 3udg-a2-m1-cB 214 98 0.3636 0.1682 0.3673 3.64e-08 3udg-a2-m1-cB_3udg-a2-m1-cC
74 1sru-a1-m1-cC 96 89 0.3333 0.3438 0.3708 4.54e-12 1sru-a1-m1-cC_1sru-a1-m1-cA
75 3pgz-a1-m1-cA 109 93 0.3131 0.2844 0.3333 6.66e-12 3pgz-a1-m1-cA_3pgz-a1-m1-cB
76 3udg-a2-m1-cC 214 76 0.2929 0.1355 0.3816 7.10e-12 3udg-a2-m1-cB_3udg-a2-m1-cC
77 3udg-a2-m1-cC 214 95 0.3434 0.1589 0.3579 1.22e-06 3udg-a2-m1-cB_3udg-a2-m1-cC
78 3lgj-a1-m1-cB 97 80 0.2929 0.2990 0.3625 1.49e-11 3lgj-a1-m1-cA_3lgj-a1-m1-cB
79 3pgz-a1-m1-cB 114 98 0.3333 0.2895 0.3367 4.21e-11 3pgz-a1-m1-cA_3pgz-a1-m1-cB
80 1se8-a1-m2-cA 205 97 0.3535 0.1707 0.3608 4.37e-10 1se8-a1-m1-cA_1se8-a1-m2-cA
81 1se8-a1-m2-cA 205 83 0.2929 0.1415 0.3494 7.43e-05 1se8-a1-m1-cA_1se8-a1-m2-cA
82 1se8-a1-m1-cA 205 97 0.3535 0.1707 0.3608 4.37e-10 1se8-a1-m1-cA_1se8-a1-m2-cA
83 1se8-a1-m1-cA 205 83 0.2929 0.1415 0.3494 7.43e-05 1se8-a1-m1-cA_1se8-a1-m2-cA
84 3lgj-a1-m1-cA 95 78 0.2929 0.3053 0.3718 1.65e-09 3lgj-a1-m1-cA_3lgj-a1-m1-cB
85 3ulp-a1-m1-cC 116 98 0.3030 0.2586 0.3061 3.21e-08 3ulp-a1-m1-cD_3ulp-a1-m1-cC
86 3ulp-a1-m1-cD 113 92 0.2727 0.2389 0.2935 5.82e-08 3ulp-a1-m1-cD_3ulp-a1-m1-cA, 3ulp-a1-m1-cD_3ulp-a1-m1-cB, 3ulp-a1-m1-cD_3ulp-a1-m1-cC
87 3ulp-a1-m1-cA 114 93 0.2828 0.2456 0.3011 1.20e-07 3ulp-a1-m1-cD_3ulp-a1-m1-cA
88 3ulp-a1-m1-cB 114 93 0.2828 0.2456 0.3011 1.67e-07 3ulp-a1-m1-cD_3ulp-a1-m1-cB
89 2dud-a2-m2-cA 95 98 0.2929 0.3053 0.2959 5.79e-05 2dud-a2-m2-cB_2dud-a2-m2-cA
90 2dud-a2-m1-cA 95 98 0.2929 0.3053 0.2959 5.79e-05 2dud-a2-m2-cB_2dud-a2-m1-cA
91 2dud-a2-m2-cB 92 97 0.2929 0.3152 0.2990 1.41e-04 2dud-a2-m2-cB_2dud-a2-m1-cA, 2dud-a2-m2-cB_2dud-a2-m2-cA
92 1txy-a1-m1-cA 89 41 0.1414 0.1573 0.3415 0.21 1txy-a1-m1-cB_1txy-a1-m1-cA
93 1woc-a1-m1-cD 97 41 0.1414 0.1443 0.3415 0.23 1woc-a1-m1-cB_1woc-a1-m1-cD
94 1woc-a1-m1-cB 97 41 0.1414 0.1443 0.3415 0.23 1woc-a1-m1-cB_1woc-a1-m1-cD
95 4dam-a2-m1-cH 108 98 0.2929 0.2685 0.2959 0.30 4dam-a2-m1-cG_4dam-a2-m1-cH
96 4eiv-a1-m1-cA 256 45 0.1717 0.0664 0.3778 1.5 4eiv-a1-m1-cA_4eiv-a1-m1-cB
97 4eiv-a1-m1-cB 256 45 0.1717 0.0664 0.3778 1.6 4eiv-a1-m1-cA_4eiv-a1-m1-cB
98 2ex2-a1-m2-cA 456 42 0.1515 0.0329 0.3571 3.3 2ex2-a1-m1-cA_2ex2-a1-m2-cA
99 2ex2-a1-m1-cA 456 42 0.1515 0.0329 0.3571 3.3 2ex2-a1-m1-cA_2ex2-a1-m2-cA
100 7bqx-a1-m5-cG 84 65 0.2121 0.2500 0.3231 7.4 7bqx-a1-m5-cK_7bqx-a1-m5-cG
101 7dpa-a1-m1-cD 1642 41 0.1313 0.0079 0.3171 7.6 7dpa-a1-m1-cA_7dpa-a1-m1-cD
102 7dpa-a1-m1-cA 1642 41 0.1313 0.0079 0.3171 7.6 7dpa-a1-m1-cA_7dpa-a1-m1-cD

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Reference:
Jacob Schwartz et al.

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