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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=98)
HMPAFLSKLWTLVEETHTNEFITWSQNGQSFLVLDEQRFAKEILPKYFKHNNMASFVRQL
NMYGFRKVVHIDDGPVEFQHPYFKQGQDDLLENIKRKV

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 5d8l-a2-m1-cF 98 98 1.0000 1.0000 1.0000 4.11e-71 5d8l-a2-m1-cF_5d8l-a2-m1-cH
2 5d8l-a2-m1-cH 106 106 1.0000 0.9245 0.9245 2.42e-68 5d8l-a2-m1-cF_5d8l-a2-m1-cH
3 7dcu-a1-m1-cB 102 101 0.9796 0.9412 0.9505 2.82e-67 7dcu-a1-m1-cC_7dcu-a1-m1-cB
4 7dcu-a1-m1-cC 92 97 0.9286 0.9891 0.9381 1.51e-62 7dcu-a1-m1-cC_7dcu-a1-m1-cB
5 5hdg-a2-m2-cA 94 96 0.6939 0.7234 0.7083 8.15e-46 5hdg-a2-m1-cA_5hdg-a2-m2-cA
6 5hdg-a2-m1-cA 94 96 0.6939 0.7234 0.7083 8.15e-46 5hdg-a2-m1-cA_5hdg-a2-m2-cA
7 5d5u-a1-m2-cB 100 99 0.6939 0.6800 0.6869 3.09e-45 5d5u-a1-m1-cB_5d5u-a1-m2-cB
8 5d5u-a1-m1-cB 100 99 0.6939 0.6800 0.6869 3.09e-45 5d5u-a1-m1-cB_5d5u-a1-m2-cB
9 7dcs-a2-m1-cE 105 105 0.7041 0.6571 0.6571 6.43e-45 7dcs-a2-m1-cF_7dcs-a2-m1-cE
10 7dcs-a2-m1-cF 93 97 0.6837 0.7204 0.6907 9.65e-44 7dcs-a2-m1-cF_7dcs-a2-m1-cE
11 6j6w-a1-m2-cB 94 95 0.6224 0.6489 0.6421 1.90e-40 6j6w-a1-m1-cA_6j6w-a1-m2-cB, 6j6w-a1-m2-cA_6j6w-a1-m2-cB
12 6j6w-a1-m2-cA 94 95 0.6224 0.6489 0.6421 1.90e-40 6j6w-a1-m2-cA_6j6w-a1-m2-cB
13 6j6w-a1-m1-cA 94 95 0.6224 0.6489 0.6421 1.90e-40 6j6w-a1-m1-cA_6j6w-a1-m2-cB
14 5d5x-a1-m1-cB 99 97 0.4694 0.4646 0.4742 1.98e-26 5d5x-a1-m1-cE_5d5x-a1-m1-cB
15 5d5x-a1-m1-cE 98 98 0.4694 0.4694 0.4694 1.34e-25 5d5x-a1-m1-cE_5d5x-a1-m1-cB
16 3hts-a1-m2-cB 82 78 0.4184 0.5000 0.5256 6.50e-25 3hts-a1-m1-cB_3hts-a1-m2-cB
17 3hts-a1-m1-cB 82 78 0.4184 0.5000 0.5256 6.50e-25 3hts-a1-m1-cB_3hts-a1-m2-cB
18 1fbs-a1-m1-cB 90 74 0.3878 0.4222 0.5135 2.42e-24 1fbs-a1-m1-cA_1fbs-a1-m1-cB
19 1fbs-a1-m1-cA 87 74 0.3878 0.4368 0.5135 2.51e-24 1fbs-a1-m1-cA_1fbs-a1-m1-cB
20 1u2g-a1-m1-cB 359 44 0.1327 0.0362 0.2955 0.81 1u2g-a1-m1-cB_1u2g-a1-m1-cA
21 1u2g-a1-m1-cA 378 44 0.1327 0.0344 0.2955 0.81 1u2g-a1-m1-cB_1u2g-a1-m1-cA
22 4g8a-a1-m1-cA 601 66 0.2041 0.0333 0.3030 4.0 4g8a-a1-m1-cA_4g8a-a1-m1-cB
23 4g8a-a1-m1-cB 605 66 0.2041 0.0331 0.3030 4.1 4g8a-a1-m1-cA_4g8a-a1-m1-cB
24 2hqm-a1-m1-cB 461 38 0.1224 0.0260 0.3158 5.2 2hqm-a1-m1-cA_2hqm-a1-m1-cB
25 2hqm-a1-m1-cA 461 38 0.1224 0.0260 0.3158 5.2 2hqm-a1-m1-cA_2hqm-a1-m1-cB
26 3vh3-a1-m2-cA 320 24 0.0918 0.0281 0.3750 6.2 3vh3-a1-m1-cA_3vh3-a1-m2-cA
27 3vh3-a1-m1-cA 320 24 0.0918 0.0281 0.3750 6.2 3vh3-a1-m1-cA_3vh3-a1-m2-cA
28 2pgs-a1-m6-cA 382 30 0.1020 0.0262 0.3333 7.2 2pgs-a1-m2-cA_2pgs-a1-m6-cA, 2pgs-a1-m5-cA_2pgs-a1-m6-cA
29 2pgs-a1-m5-cA 382 30 0.1020 0.0262 0.3333 7.2 2pgs-a1-m5-cA_2pgs-a1-m6-cA
30 2pgs-a1-m2-cA 382 30 0.1020 0.0262 0.3333 7.2 2pgs-a1-m2-cA_2pgs-a1-m6-cA
31 3vh2-a1-m2-cA 582 24 0.0918 0.0155 0.3750 9.1 3vh2-a1-m1-cA_3vh2-a1-m2-cA
32 3vh2-a1-m1-cA 582 24 0.0918 0.0155 0.3750 9.1 3vh2-a1-m1-cA_3vh2-a1-m2-cA

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Reference:
Jacob Schwartz et al.

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