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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=65)
HMQRGKVKWFNNEKGYGFIEVEGGSDVFVHFTAIQGFKTLEEGQEVSFEIVQGNRGPQAA
NVVKL

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 5jx4-a1-m1-cA 65 65 1.0000 1.0000 1.0000 1.12e-42 5jx4-a1-m1-cA_5jx4-a1-m1-cB
2 5jx4-a1-m1-cB 66 65 1.0000 0.9848 1.0000 1.28e-42 5jx4-a1-m1-cA_5jx4-a1-m1-cB
3 2hax-a1-m1-cB 66 66 0.9846 0.9697 0.9697 1.77e-39 2hax-a1-m1-cA_2hax-a1-m1-cB
4 2hax-a1-m1-cA 66 66 0.9846 0.9697 0.9697 1.77e-39 2hax-a1-m1-cA_2hax-a1-m1-cB
5 1c9o-a1-m1-cB 66 66 0.9846 0.9697 0.9697 1.77e-39 1c9o-a1-m1-cA_1c9o-a1-m1-cB
6 1c9o-a1-m1-cA 66 66 0.9846 0.9697 0.9697 1.77e-39 1c9o-a1-m1-cA_1c9o-a1-m1-cB
7 1hzb-a1-m1-cB 66 65 0.9692 0.9545 0.9692 1.13e-38 1hzb-a1-m1-cA_1hzb-a1-m1-cB
8 1hzb-a1-m1-cA 66 65 0.9692 0.9545 0.9692 1.13e-38 1hzb-a1-m1-cA_1hzb-a1-m1-cB
9 2i5m-a2-m2-cX 66 65 0.8000 0.7879 0.8000 1.00e-30 2i5m-a2-m1-cX_2i5m-a2-m2-cX
10 2i5m-a2-m1-cX 66 65 0.8000 0.7879 0.8000 1.00e-30 2i5m-a2-m1-cX_2i5m-a2-m2-cX
11 3i2z-a1-m1-cA 71 70 0.6923 0.6338 0.6429 6.37e-23 3i2z-a1-m1-cB_3i2z-a1-m1-cA
12 3i2z-a1-m1-cB 67 65 0.6615 0.6418 0.6615 1.74e-22 3i2z-a1-m1-cB_3i2z-a1-m1-cA
13 3cam-a1-m1-cB 65 60 0.5692 0.5692 0.6167 1.38e-19 3cam-a1-m1-cA_3cam-a1-m1-cB
14 3cam-a1-m1-cA 65 60 0.5692 0.5692 0.6167 1.38e-19 3cam-a1-m1-cA_3cam-a1-m1-cB
15 7f3i-a1-m1-cA 93 66 0.4308 0.3011 0.4242 4.80e-10 7f3i-a1-m1-cE_7f3i-a1-m1-cA
16 7f3i-a1-m1-cE 91 66 0.4308 0.3077 0.4242 5.12e-10 7f3i-a1-m1-cE_7f3i-a1-m1-cA
17 3aqq-a1-m1-cD 98 63 0.3538 0.2347 0.3651 6.34e-07 3aqq-a1-m1-cC_3aqq-a1-m1-cD, 3aqq-a1-m1-cD_3aqq-a1-m1-cB
18 4alp-a1-m4-cD 84 69 0.3692 0.2857 0.3478 1.04e-06 4alp-a1-m4-cD_4alp-a1-m2-cB
19 3ulj-a3-m2-cA 87 69 0.3692 0.2759 0.3478 1.12e-06 3ulj-a3-m2-cA_3ulj-a3-m2-cB
20 3ulj-a3-m1-cA 87 69 0.3692 0.2759 0.3478 1.12e-06 3ulj-a3-m1-cA_3ulj-a3-m2-cB
21 2bh8-a1-m2-cB 86 30 0.3077 0.2326 0.6667 1.13e-06 2bh8-a1-m1-cA_2bh8-a1-m2-cB, 2bh8-a1-m1-cB_2bh8-a1-m2-cB, 2bh8-a1-m2-cA_2bh8-a1-m2-cB
22 2bh8-a1-m1-cB 86 30 0.3077 0.2326 0.6667 1.13e-06 2bh8-a1-m1-cB_2bh8-a1-m2-cB
23 2bh8-a1-m2-cA 85 30 0.3077 0.2353 0.6667 1.16e-06 2bh8-a1-m2-cA_2bh8-a1-m2-cB
24 2bh8-a1-m1-cA 85 30 0.3077 0.2353 0.6667 1.16e-06 2bh8-a1-m1-cA_2bh8-a1-m2-cB
25 3aqq-a1-m1-cC 97 62 0.3538 0.2371 0.3710 1.18e-06 3aqq-a1-m1-cC_3aqq-a1-m1-cB, 3aqq-a1-m1-cC_3aqq-a1-m1-cD
26 4alp-a1-m2-cB 86 69 0.3692 0.2791 0.3478 1.18e-06 4alp-a1-m4-cD_4alp-a1-m2-cB
27 3aqq-a1-m1-cB 99 64 0.3692 0.2424 0.3750 1.84e-06 3aqq-a1-m1-cC_3aqq-a1-m1-cB, 3aqq-a1-m1-cD_3aqq-a1-m1-cB
28 3ulj-a3-m2-cB 89 54 0.3385 0.2472 0.4074 1.54e-05 3ulj-a3-m1-cA_3ulj-a3-m2-cB, 3ulj-a3-m2-cA_3ulj-a3-m2-cB
29 2cb1-a1-m4-cA 404 17 0.1692 0.0272 0.6471 1.1 2cb1-a1-m1-cA_2cb1-a1-m4-cA, 2cb1-a1-m2-cA_2cb1-a1-m4-cA, 2cb1-a1-m3-cA_2cb1-a1-m4-cA
30 2cb1-a1-m3-cA 404 17 0.1692 0.0272 0.6471 1.1 2cb1-a1-m3-cA_2cb1-a1-m4-cA
31 2cb1-a1-m2-cA 404 17 0.1692 0.0272 0.6471 1.1 2cb1-a1-m2-cA_2cb1-a1-m4-cA
32 2cb1-a1-m1-cA 404 17 0.1692 0.0272 0.6471 1.1 2cb1-a1-m1-cA_2cb1-a1-m4-cA
33 4ags-a1-m1-cA 430 45 0.2308 0.0349 0.3333 1.3 4ags-a1-m1-cA_4ags-a1-m1-cC
34 4ags-a1-m1-cC 430 45 0.2308 0.0349 0.3333 1.4 4ags-a1-m1-cA_4ags-a1-m1-cC
35 2o6x-a1-m2-cA 306 55 0.2462 0.0523 0.2909 3.7 2o6x-a1-m1-cA_2o6x-a1-m2-cA
36 2o6x-a1-m1-cA 306 55 0.2462 0.0523 0.2909 3.7 2o6x-a1-m1-cA_2o6x-a1-m2-cA
37 3gbu-a1-m1-cD 297 67 0.3077 0.0673 0.2985 5.3 3gbu-a1-m1-cA_3gbu-a1-m1-cD
38 3gbu-a1-m1-cA 297 67 0.3077 0.0673 0.2985 5.3 3gbu-a1-m1-cA_3gbu-a1-m1-cD

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Reference:
Jacob Schwartz et al.

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