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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=79)
HMRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEG
KIDVIEIVWLERPRSLTLK

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 2y4y-a1-m2-cC 79 79 1.0000 1.0000 1.0000 3.17e-53 2y4y-a1-m2-cB_2y4y-a1-m2-cC
2 2y4y-a1-m2-cD 80 77 0.9620 0.9500 0.9870 1.78e-48 2y4y-a1-m1-cB_2y4y-a1-m2-cD
3 2y4y-a1-m2-cB 76 77 0.9620 1.0000 0.9870 6.19e-48 2y4y-a1-m1-cB_2y4y-a1-m2-cB, 2y4y-a1-m2-cB_2y4y-a1-m2-cC
4 2y4y-a1-m1-cB 76 77 0.9620 1.0000 0.9870 6.19e-48 2y4y-a1-m1-cB_2y4y-a1-m2-cB, 2y4y-a1-m1-cB_2y4y-a1-m2-cD
5 2ipc-a2-m1-cC 939 39 0.1899 0.0160 0.3846 4.1 2ipc-a2-m1-cD_2ipc-a2-m1-cC
6 2ipc-a2-m1-cD 934 39 0.1899 0.0161 0.3846 4.3 2ipc-a2-m1-cD_2ipc-a2-m1-cC
7 4ive-a1-m1-cB 73 25 0.1519 0.1644 0.4800 4.4 4ive-a1-m1-cD_4ive-a1-m1-cB
8 6gun-a2-m2-cC 290 48 0.1899 0.0517 0.3125 4.6 6gun-a2-m2-cC_6gun-a2-m1-cD
9 4ive-a3-m1-cD 72 25 0.1519 0.1667 0.4800 4.7 4ive-a3-m1-cC_4ive-a3-m1-cD
10 4ive-a3-m1-cC 72 25 0.1519 0.1667 0.4800 4.7 4ive-a3-m1-cC_4ive-a3-m1-cD
11 4ive-a1-m1-cD 72 25 0.1519 0.1667 0.4800 4.7 4ive-a1-m1-cA_4ive-a1-m1-cD, 4ive-a1-m1-cD_4ive-a1-m1-cB
12 4ive-a1-m1-cA 72 25 0.1519 0.1667 0.4800 4.7 4ive-a1-m1-cA_4ive-a1-m1-cD
13 6gun-a2-m1-cD 298 48 0.1899 0.0503 0.3125 5.1 6gun-a2-m2-cC_6gun-a2-m1-cD
14 4atm-a1-m2-cA 221 50 0.2278 0.0814 0.3600 5.2 4atm-a1-m1-cA_4atm-a1-m2-cA
15 4atm-a1-m1-cA 221 50 0.2278 0.0814 0.3600 5.2 4atm-a1-m1-cA_4atm-a1-m2-cA
16 5a98-a1-m3-cA 235 33 0.1772 0.0596 0.4242 5.3 5a98-a1-m2-cA_5a98-a1-m3-cA
17 5a98-a1-m2-cA 235 33 0.1772 0.0596 0.4242 5.3 5a98-a1-m2-cA_5a98-a1-m3-cA
18 1vmd-a1-m3-cB 156 58 0.3038 0.1538 0.4138 8.1 1vmd-a1-m1-cA_1vmd-a1-m3-cB, 1vmd-a1-m3-cA_1vmd-a1-m3-cB
19 1vmd-a1-m3-cA 156 58 0.3038 0.1538 0.4138 8.1 1vmd-a1-m3-cA_1vmd-a1-m3-cB
20 1vmd-a1-m1-cA 156 58 0.3038 0.1538 0.4138 8.1 1vmd-a1-m1-cA_1vmd-a1-m3-cB

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Reference:
Jacob Schwartz et al.

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